Protein–RNA interactions for Protein: P28357

Hoxd9, Homeobox protein Hox-D9, mousemouse

Predictions only

Length 339 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd9P28357 2210408I21Rik-201ENSMUST00000168779 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
Hoxd9P28357 Gm37393-201ENSMUST00000195118 3870 ntBASIC4.44□□□□□ -1.7
Hoxd9P28357 Gm38253-201ENSMUST00000194058 4678 ntBASIC4.43□□□□□ -1.7
Hoxd9P28357 Cd84-205ENSMUST00000155802 3291 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
Hoxd9P28357 Olfr1093-203ENSMUST00000219561 2124 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
Hoxd9P28357 Dmxl2-202ENSMUST00000118600 9465 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
Hoxd9P28357 Olfr870-202ENSMUST00000215984 4091 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
Hoxd9P28357 Pde1a-204ENSMUST00000102653 2439 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
Hoxd9P28357 Zfp426-201ENSMUST00000080386 2417 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
Hoxd9P28357 Acsm3-202ENSMUST00000106526 2704 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
Hoxd9P28357 Olfr1317-204ENSMUST00000216988 2488 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
Hoxd9P28357 Gm23594-201ENSMUST00000104307 134 ntBASIC4.43□□□□□ -1.7
Hoxd9P28357 Gm22699-201ENSMUST00000175376 105 ntBASIC4.43□□□□□ -1.7
Hoxd9P28357 Gm26097-201ENSMUST00000179642 93 ntBASIC4.43□□□□□ -1.7
Hoxd9P28357 4930431P19Rik-201ENSMUST00000207570 451 ntBASIC4.43□□□□□ -1.7
Hoxd9P28357 Gm45907-201ENSMUST00000213023 193 ntBASIC4.43□□□□□ -1.7
Hoxd9P28357 Gm23650-201ENSMUST00000083355 70 ntBASIC4.43□□□□□ -1.7
Hoxd9P28357 Snora2b-201ENSMUST00000084005 137 ntBASIC4.43□□□□□ -1.7
Hoxd9P28357 Gm2099-202ENSMUST00000223310 3341 ntBASIC4.43□□□□□ -1.7
Hoxd9P28357 Gnrhr-203ENSMUST00000113372 2265 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
Hoxd9P28357 Olfr726-203ENSMUST00000213345 1728 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
Hoxd9P28357 Ifit2-201ENSMUST00000102826 3818 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
Hoxd9P28357 AC153969.1-201ENSMUST00000214047 2605 ntBASIC4.42□□□□□ -1.7
Hoxd9P28357 Gm43668-201ENSMUST00000197014 5342 ntBASIC4.42□□□□□ -1.7
Hoxd9P28357 Gm43923-201ENSMUST00000203992 2911 ntBASIC4.42□□□□□ -1.7
Hoxd9P28357 Mga-203ENSMUST00000110773 13577 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
Hoxd9P28357 Gm29325-201ENSMUST00000190705 2528 ntBASIC4.42□□□□□ -1.7
Hoxd9P28357 Jpx-201ENSMUST00000181020 3802 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
Hoxd9P28357 Zfp62-201ENSMUST00000061757 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
Hoxd9P28357 Slc10a2-201ENSMUST00000023835 4152 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
Hoxd9P28357 AC122382.2-201ENSMUST00000225128 3602 ntBASIC4.42□□□□□ -1.7
Hoxd9P28357 Traj37-201ENSMUST00000103705 60 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
Hoxd9P28357 Zfp85-202ENSMUST00000144183 2312 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
Hoxd9P28357 Gm24015-201ENSMUST00000157725 232 ntBASIC4.42□□□□□ -1.7
Hoxd9P28357 Mir1967-201ENSMUST00000157789 82 ntBASIC4.42□□□□□ -1.7
Hoxd9P28357 Gm16490-201ENSMUST00000165299 351 ntBASIC4.42□□□□□ -1.7
Hoxd9P28357 Gm27535-201ENSMUST00000183814 157 ntBASIC4.42□□□□□ -1.7
Hoxd9P28357 Gm37754-201ENSMUST00000194406 452 ntTSL 5 BASIC4.42□□□□□ -1.7
Hoxd9P28357 Rpl36a-ps2-201ENSMUST00000197973 321 ntBASIC4.42□□□□□ -1.7
Hoxd9P28357 Gm44485-201ENSMUST00000199569 137 ntBASIC4.42□□□□□ -1.7
Hoxd9P28357 Gm19096-201ENSMUST00000209705 766 ntBASIC4.42□□□□□ -1.7
Hoxd9P28357 AC164304.1-201ENSMUST00000226920 272 ntBASIC4.42□□□□□ -1.7
Hoxd9P28357 Slc15a2-201ENSMUST00000023616 3993 ntAPPRIS P2 TSL 1 (best) BASIC4.42□□□□□ -1.7
Hoxd9P28357 n-R5s167-201ENSMUST00000083227 121 ntBASIC4.42□□□□□ -1.7
Hoxd9P28357 Hrnr-202ENSMUST00000093774 11187 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
Hoxd9P28357 Zfyve9-203ENSMUST00000106658 5987 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
Hoxd9P28357 Ulbp1-203ENSMUST00000218087 5959 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
Hoxd9P28357 Hdx-202ENSMUST00000113422 9534 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
Hoxd9P28357 Trim30a-201ENSMUST00000076922 3771 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
Hoxd9P28357 Gm12580-201ENSMUST00000127456 1751 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
Hoxd9P28357 Olfr869-201ENSMUST00000213024 1783 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
Hoxd9P28357 Adam24-201ENSMUST00000051614 2887 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
Hoxd9P28357 Olfr916-203ENSMUST00000214093 3685 ntAPPRIS P1 TSL 3 BASIC4.42□□□□□ -1.7
Hoxd9P28357 Gm28362-201ENSMUST00000189430 2420 ntBASIC4.42□□□□□ -1.7
Hoxd9P28357 Trappc13-205ENSMUST00000144060 3538 ntAPPRIS ALT1 TSL 1 (best) BASIC4.41□□□□□ -1.7
Hoxd9P28357 Olfr410-203ENSMUST00000214490 5075 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
Hoxd9P28357 Zfp976-203ENSMUST00000187616 1908 ntTSL 5 BASIC4.41□□□□□ -1.7
Hoxd9P28357 Primpol-201ENSMUST00000040468 3772 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
Hoxd9P28357 Gm23319-201ENSMUST00000104467 131 ntBASIC4.41□□□□□ -1.7
Hoxd9P28357 Gm23608-201ENSMUST00000104545 128 ntBASIC4.41□□□□□ -1.7
Hoxd9P28357 Gm14881-201ENSMUST00000120366 372 ntBASIC4.41□□□□□ -1.7
Hoxd9P28357 Gm11448-201ENSMUST00000120427 450 ntBASIC4.41□□□□□ -1.7
Hoxd9P28357 Gm15537-201ENSMUST00000126677 485 ntTSL 2 BASIC4.41□□□□□ -1.7
Hoxd9P28357 Gm13096-201ENSMUST00000127752 251 ntTSL 5 BASIC4.41□□□□□ -1.7
Hoxd9P28357 Gm24113-201ENSMUST00000157477 276 ntBASIC4.41□□□□□ -1.7
Hoxd9P28357 Gm22966-201ENSMUST00000157957 129 ntBASIC4.41□□□□□ -1.7
Hoxd9P28357 Gm26157-201ENSMUST00000158974 126 ntBASIC4.41□□□□□ -1.7
Hoxd9P28357 Gm20428-201ENSMUST00000174365 283 ntBASIC4.41□□□□□ -1.7
Hoxd9P28357 Gm26683-201ENSMUST00000181737 470 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
Hoxd9P28357 Mir1957b-201ENSMUST00000184608 123 ntBASIC4.41□□□□□ -1.7
Hoxd9P28357 Gm6003-201ENSMUST00000187903 463 ntBASIC4.41□□□□□ -1.7
Hoxd9P28357 Cr2-206ENSMUST00000193801 206 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
Hoxd9P28357 Gm35386-201ENSMUST00000204603 629 ntTSL 3 BASIC4.41□□□□□ -1.7
Hoxd9P28357 Kcnj1-203ENSMUST00000213393 1277 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
Hoxd9P28357 Gm23300-201ENSMUST00000082712 125 ntBASIC4.41□□□□□ -1.7
Hoxd9P28357 n-R5s160-201ENSMUST00000083096 120 ntBASIC4.41□□□□□ -1.7
Hoxd9P28357 Vmn1r209-202ENSMUST00000227038 6461 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
Hoxd9P28357 4932438A13Rik-217ENSMUST00000152564 15541 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
Hoxd9P28357 AC154548.1-201ENSMUST00000225844 3838 ntBASIC4.41□□□□□ -1.7
Hoxd9P28357 Gm3239-201ENSMUST00000163525 1751 ntAPPRIS P5 TSL 5 BASIC4.4□□□□□ -1.7
Hoxd9P28357 Ptgs2-201ENSMUST00000035065 4453 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
Hoxd9P28357 Vmn2r101-201ENSMUST00000171914 2574 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.7
Hoxd9P28357 Klri2-201ENSMUST00000050385 3913 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
Hoxd9P28357 Cd28-201ENSMUST00000027165 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
Hoxd9P28357 Gm9921-201ENSMUST00000173293 4399 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
Hoxd9P28357 Gm13961-201ENSMUST00000119282 4772 ntBASIC4.4□□□□□ -1.71
Hoxd9P28357 Gm25089-201ENSMUST00000102015 79 ntBASIC4.4□□□□□ -1.71
Hoxd9P28357 Gm14894-201ENSMUST00000117170 270 ntBASIC4.4□□□□□ -1.71
Hoxd9P28357 Gm12125-201ENSMUST00000117261 736 ntBASIC4.4□□□□□ -1.71
Hoxd9P28357 Gm15282-201ENSMUST00000117707 300 ntBASIC4.4□□□□□ -1.71
Hoxd9P28357 Gm11429-201ENSMUST00000119089 144 ntBASIC4.4□□□□□ -1.71
Hoxd9P28357 Gm11785-201ENSMUST00000120165 601 ntBASIC4.4□□□□□ -1.71
Hoxd9P28357 Gm13210-201ENSMUST00000121483 273 ntBASIC4.4□□□□□ -1.71
Hoxd9P28357 Gm15065-201ENSMUST00000121699 273 ntBASIC4.4□□□□□ -1.71
Hoxd9P28357 Gm12974-201ENSMUST00000129875 333 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
Hoxd9P28357 Gm15414-201ENSMUST00000155217 440 ntTSL 3 BASIC4.4□□□□□ -1.71
Hoxd9P28357 Gm22349-201ENSMUST00000157864 107 ntBASIC4.4□□□□□ -1.71
Hoxd9P28357 Gm25840-201ENSMUST00000177821 79 ntBASIC4.4□□□□□ -1.71
Hoxd9P28357 Gm24952-201ENSMUST00000177909 79 ntBASIC4.4□□□□□ -1.71
Hoxd9P28357 Gm23682-201ENSMUST00000178146 79 ntBASIC4.4□□□□□ -1.71
Retrieved 100 of 76,532 protein–RNA pairs in 81.1 ms