Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim54Q9ERP3 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim54Q9ERP3 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Trim54Q9ERP3 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC18.56■□□□□ 0.56
Trim54Q9ERP3 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trim54Q9ERP3 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trim54Q9ERP3 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim54Q9ERP3 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC18.56■□□□□ 0.56
Trim54Q9ERP3 Gm43272-201ENSMUST00000200599 1584 ntBASIC18.56■□□□□ 0.56
Trim54Q9ERP3 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim54Q9ERP3 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Trim54Q9ERP3 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC18.56■□□□□ 0.56
Trim54Q9ERP3 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim54Q9ERP3 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim54Q9ERP3 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim54Q9ERP3 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim54Q9ERP3 Gm11355-201ENSMUST00000121120 306 ntBASIC18.56■□□□□ 0.56
Trim54Q9ERP3 Gm26039-201ENSMUST00000158152 144 ntBASIC18.56■□□□□ 0.56
Trim54Q9ERP3 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC18.56■□□□□ 0.56
Trim54Q9ERP3 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim54Q9ERP3 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim54Q9ERP3 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim54Q9ERP3 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim54Q9ERP3 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trim54Q9ERP3 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim54Q9ERP3 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim54Q9ERP3 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC18.56■□□□□ 0.56
Trim54Q9ERP3 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim54Q9ERP3 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim54Q9ERP3 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim54Q9ERP3 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim54Q9ERP3 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trim54Q9ERP3 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC18.55■□□□□ 0.56
Trim54Q9ERP3 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trim54Q9ERP3 Gm27741-201ENSMUST00000185060 237 ntBASIC18.55■□□□□ 0.56
Trim54Q9ERP3 Gm17808-201ENSMUST00000200859 894 ntBASIC18.55■□□□□ 0.56
Trim54Q9ERP3 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trim54Q9ERP3 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim54Q9ERP3 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Trim54Q9ERP3 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim54Q9ERP3 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim54Q9ERP3 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim54Q9ERP3 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim54Q9ERP3 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim54Q9ERP3 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC18.54■□□□□ 0.56
Trim54Q9ERP3 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC18.54■□□□□ 0.56
Trim54Q9ERP3 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC18.54■□□□□ 0.56
Trim54Q9ERP3 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim54Q9ERP3 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
Trim54Q9ERP3 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Trim54Q9ERP3 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC18.54■□□□□ 0.56
Trim54Q9ERP3 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim54Q9ERP3 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim54Q9ERP3 Gm19721-201ENSMUST00000195284 1764 ntBASIC18.54■□□□□ 0.56
Trim54Q9ERP3 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim54Q9ERP3 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim54Q9ERP3 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim54Q9ERP3 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim54Q9ERP3 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim54Q9ERP3 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
Trim54Q9ERP3 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim54Q9ERP3 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trim54Q9ERP3 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim54Q9ERP3 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim54Q9ERP3 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim54Q9ERP3 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC18.53■□□□□ 0.56
Trim54Q9ERP3 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim54Q9ERP3 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim54Q9ERP3 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC18.53■□□□□ 0.56
Trim54Q9ERP3 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim54Q9ERP3 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
Trim54Q9ERP3 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC18.53■□□□□ 0.56
Trim54Q9ERP3 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trim54Q9ERP3 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC18.53■□□□□ 0.56
Trim54Q9ERP3 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Trim54Q9ERP3 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim54Q9ERP3 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim54Q9ERP3 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim54Q9ERP3 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim54Q9ERP3 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim54Q9ERP3 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim54Q9ERP3 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC18.52■□□□□ 0.56
Trim54Q9ERP3 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trim54Q9ERP3 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC18.52■□□□□ 0.56
Trim54Q9ERP3 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trim54Q9ERP3 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trim54Q9ERP3 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Trim54Q9ERP3 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trim54Q9ERP3 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Trim54Q9ERP3 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
Trim54Q9ERP3 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trim54Q9ERP3 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trim54Q9ERP3 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Trim54Q9ERP3 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Trim54Q9ERP3 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Trim54Q9ERP3 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim54Q9ERP3 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Trim54Q9ERP3 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim54Q9ERP3 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim54Q9ERP3 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 52.5 ms