Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Msh4Q99MT2 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Msh4Q99MT2 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Msh4Q99MT2 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Msh4Q99MT2 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Msh4Q99MT2 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Msh4Q99MT2 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Msh4Q99MT2 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Msh4Q99MT2 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Msh4Q99MT2 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Msh4Q99MT2 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Msh4Q99MT2 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Msh4Q99MT2 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Msh4Q99MT2 Gm43808-201ENSMUST00000202534 2065 ntBASIC16.71■□□□□ 0.27
Msh4Q99MT2 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
Msh4Q99MT2 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Msh4Q99MT2 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Msh4Q99MT2 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
Msh4Q99MT2 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Msh4Q99MT2 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Msh4Q99MT2 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Msh4Q99MT2 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Msh4Q99MT2 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC16.71■□□□□ 0.27
Msh4Q99MT2 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Msh4Q99MT2 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Msh4Q99MT2 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Msh4Q99MT2 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Msh4Q99MT2 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
Msh4Q99MT2 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Msh4Q99MT2 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Msh4Q99MT2 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Msh4Q99MT2 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.26
Msh4Q99MT2 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Msh4Q99MT2 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Msh4Q99MT2 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Msh4Q99MT2 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Msh4Q99MT2 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Msh4Q99MT2 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Msh4Q99MT2 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC16.7■□□□□ 0.26
Msh4Q99MT2 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC16.7■□□□□ 0.26
Msh4Q99MT2 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Msh4Q99MT2 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Msh4Q99MT2 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Msh4Q99MT2 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
Msh4Q99MT2 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
Msh4Q99MT2 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Msh4Q99MT2 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
Msh4Q99MT2 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC16.7■□□□□ 0.26
Msh4Q99MT2 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Msh4Q99MT2 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC16.7■□□□□ 0.26
Msh4Q99MT2 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Msh4Q99MT2 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Msh4Q99MT2 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Msh4Q99MT2 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Msh4Q99MT2 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Msh4Q99MT2 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Msh4Q99MT2 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Msh4Q99MT2 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC16.69■□□□□ 0.26
Msh4Q99MT2 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Msh4Q99MT2 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Msh4Q99MT2 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Msh4Q99MT2 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Msh4Q99MT2 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Msh4Q99MT2 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC16.69■□□□□ 0.26
Msh4Q99MT2 Mir5122-201ENSMUST00000175004 89 ntBASIC16.69■□□□□ 0.26
Msh4Q99MT2 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC16.69■□□□□ 0.26
Msh4Q99MT2 Gm37055-201ENSMUST00000191866 133 ntBASIC16.69■□□□□ 0.26
Msh4Q99MT2 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Msh4Q99MT2 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Msh4Q99MT2 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Msh4Q99MT2 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Msh4Q99MT2 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Msh4Q99MT2 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Msh4Q99MT2 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Msh4Q99MT2 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Msh4Q99MT2 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Msh4Q99MT2 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC16.69■□□□□ 0.26
Msh4Q99MT2 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Msh4Q99MT2 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Msh4Q99MT2 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Msh4Q99MT2 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC16.68■□□□□ 0.26
Msh4Q99MT2 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Msh4Q99MT2 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Msh4Q99MT2 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Msh4Q99MT2 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Msh4Q99MT2 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Msh4Q99MT2 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Msh4Q99MT2 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC16.68■□□□□ 0.26
Msh4Q99MT2 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC16.68■□□□□ 0.26
Msh4Q99MT2 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC16.68■□□□□ 0.26
Msh4Q99MT2 Gm9484-201ENSMUST00000195892 1159 ntBASIC16.68■□□□□ 0.26
Msh4Q99MT2 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC16.68■□□□□ 0.26
Msh4Q99MT2 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Msh4Q99MT2 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC16.68■□□□□ 0.26
Msh4Q99MT2 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Msh4Q99MT2 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Msh4Q99MT2 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Msh4Q99MT2 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Msh4Q99MT2 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Msh4Q99MT2 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms