Protein–RNA interactions for Protein: Q99LC2

Cstf1, Cleavage stimulation factor subunit 1, mousemouse

Known RBP Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cstf1Q99LC2 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cstf1Q99LC2 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cstf1Q99LC2 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cstf1Q99LC2 AC121961.1-201ENSMUST00000218594 1779 ntBASIC17.12■□□□□ 0.33
Cstf1Q99LC2 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cstf1Q99LC2 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cstf1Q99LC2 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC17.12■□□□□ 0.33
Cstf1Q99LC2 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cstf1Q99LC2 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cstf1Q99LC2 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cstf1Q99LC2 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cstf1Q99LC2 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cstf1Q99LC2 Gm35558-201ENSMUST00000222675 2219 ntBASIC17.11■□□□□ 0.33
Cstf1Q99LC2 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC17.11■□□□□ 0.33
Cstf1Q99LC2 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Cstf1Q99LC2 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC17.11■□□□□ 0.33
Cstf1Q99LC2 Ighv6-1-201ENSMUST00000193612 343 ntBASIC17.11■□□□□ 0.33
Cstf1Q99LC2 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cstf1Q99LC2 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC17.11■□□□□ 0.33
Cstf1Q99LC2 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Cstf1Q99LC2 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC17.11■□□□□ 0.33
Cstf1Q99LC2 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cstf1Q99LC2 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cstf1Q99LC2 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Cstf1Q99LC2 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Cstf1Q99LC2 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cstf1Q99LC2 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cstf1Q99LC2 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cstf1Q99LC2 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cstf1Q99LC2 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC17.1■□□□□ 0.33
Cstf1Q99LC2 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cstf1Q99LC2 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Cstf1Q99LC2 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cstf1Q99LC2 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
Cstf1Q99LC2 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cstf1Q99LC2 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cstf1Q99LC2 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cstf1Q99LC2 Gm29791-202ENSMUST00000207888 369 ntBASIC17.1■□□□□ 0.33
Cstf1Q99LC2 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC17.1■□□□□ 0.33
Cstf1Q99LC2 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cstf1Q99LC2 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Cstf1Q99LC2 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cstf1Q99LC2 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Cstf1Q99LC2 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cstf1Q99LC2 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cstf1Q99LC2 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cstf1Q99LC2 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Cstf1Q99LC2 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cstf1Q99LC2 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cstf1Q99LC2 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cstf1Q99LC2 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Cstf1Q99LC2 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Cstf1Q99LC2 Gm18733-201ENSMUST00000173950 856 ntBASIC17.09■□□□□ 0.33
Cstf1Q99LC2 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC17.09■□□□□ 0.33
Cstf1Q99LC2 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Cstf1Q99LC2 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC17.09■□□□□ 0.33
Cstf1Q99LC2 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Cstf1Q99LC2 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cstf1Q99LC2 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cstf1Q99LC2 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cstf1Q99LC2 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cstf1Q99LC2 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cstf1Q99LC2 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cstf1Q99LC2 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cstf1Q99LC2 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cstf1Q99LC2 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cstf1Q99LC2 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Cstf1Q99LC2 Actl10-202ENSMUST00000226583 1501 ntBASIC17.08■□□□□ 0.32
Cstf1Q99LC2 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
Cstf1Q99LC2 Gm11452-201ENSMUST00000122376 690 ntBASIC17.08■□□□□ 0.32
Cstf1Q99LC2 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC17.08■□□□□ 0.32
Cstf1Q99LC2 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cstf1Q99LC2 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Cstf1Q99LC2 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC17.08■□□□□ 0.32
Cstf1Q99LC2 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC17.08■□□□□ 0.32
Cstf1Q99LC2 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC17.08■□□□□ 0.32
Cstf1Q99LC2 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Cstf1Q99LC2 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC17.08■□□□□ 0.32
Cstf1Q99LC2 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cstf1Q99LC2 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.32
Cstf1Q99LC2 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cstf1Q99LC2 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cstf1Q99LC2 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cstf1Q99LC2 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Cstf1Q99LC2 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Cstf1Q99LC2 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cstf1Q99LC2 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cstf1Q99LC2 Gm9885-202ENSMUST00000186234 2209 ntBASIC17.07■□□□□ 0.32
Cstf1Q99LC2 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Cstf1Q99LC2 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Cstf1Q99LC2 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC17.07■□□□□ 0.32
Cstf1Q99LC2 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Cstf1Q99LC2 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Cstf1Q99LC2 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC17.07■□□□□ 0.32
Cstf1Q99LC2 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Cstf1Q99LC2 AC122351.1-201ENSMUST00000220467 126 ntBASIC17.07■□□□□ 0.32
Cstf1Q99LC2 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cstf1Q99LC2 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cstf1Q99LC2 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cstf1Q99LC2 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC17.07■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms