Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc28aQ8CEI3 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Ccdc28aQ8CEI3 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc28aQ8CEI3 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc28aQ8CEI3 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc28aQ8CEI3 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc28aQ8CEI3 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc28aQ8CEI3 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC18.12■□□□□ 0.49
Ccdc28aQ8CEI3 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc28aQ8CEI3 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc28aQ8CEI3 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc28aQ8CEI3 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc28aQ8CEI3 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc28aQ8CEI3 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Ccdc28aQ8CEI3 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc28aQ8CEI3 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ccdc28aQ8CEI3 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
Ccdc28aQ8CEI3 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC18.12■□□□□ 0.49
Ccdc28aQ8CEI3 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc28aQ8CEI3 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc28aQ8CEI3 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc28aQ8CEI3 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc28aQ8CEI3 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc28aQ8CEI3 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc28aQ8CEI3 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc28aQ8CEI3 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc28aQ8CEI3 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC18.11■□□□□ 0.49
Ccdc28aQ8CEI3 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC18.11■□□□□ 0.49
Ccdc28aQ8CEI3 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc28aQ8CEI3 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc28aQ8CEI3 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Ccdc28aQ8CEI3 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc28aQ8CEI3 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc28aQ8CEI3 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc28aQ8CEI3 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc28aQ8CEI3 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc28aQ8CEI3 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc28aQ8CEI3 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc28aQ8CEI3 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc28aQ8CEI3 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc28aQ8CEI3 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC18.1■□□□□ 0.49
Ccdc28aQ8CEI3 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc28aQ8CEI3 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc28aQ8CEI3 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc28aQ8CEI3 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC18.1■□□□□ 0.49
Ccdc28aQ8CEI3 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Ccdc28aQ8CEI3 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
Ccdc28aQ8CEI3 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC18.1■□□□□ 0.49
Ccdc28aQ8CEI3 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc28aQ8CEI3 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc28aQ8CEI3 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc28aQ8CEI3 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC18.1■□□□□ 0.49
Ccdc28aQ8CEI3 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC18.1■□□□□ 0.49
Ccdc28aQ8CEI3 Mtag2-201ENSMUST00000058665 714 ntBASIC18.1■□□□□ 0.49
Ccdc28aQ8CEI3 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc28aQ8CEI3 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc28aQ8CEI3 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc28aQ8CEI3 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC18.1■□□□□ 0.49
Ccdc28aQ8CEI3 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc28aQ8CEI3 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc28aQ8CEI3 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc28aQ8CEI3 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc28aQ8CEI3 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc28aQ8CEI3 Gm13148-201ENSMUST00000118892 745 ntBASIC18.09■□□□□ 0.49
Ccdc28aQ8CEI3 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC18.09■□□□□ 0.49
Ccdc28aQ8CEI3 Gm26571-201ENSMUST00000181399 666 ntBASIC18.09■□□□□ 0.49
Ccdc28aQ8CEI3 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Ccdc28aQ8CEI3 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC18.09■□□□□ 0.49
Ccdc28aQ8CEI3 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Ccdc28aQ8CEI3 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc28aQ8CEI3 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC18.09■□□□□ 0.49
Ccdc28aQ8CEI3 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc28aQ8CEI3 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc28aQ8CEI3 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc28aQ8CEI3 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc28aQ8CEI3 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc28aQ8CEI3 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc28aQ8CEI3 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Ccdc28aQ8CEI3 Gm10654-201ENSMUST00000098653 1633 ntBASIC18.09■□□□□ 0.49
Ccdc28aQ8CEI3 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
Ccdc28aQ8CEI3 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Ccdc28aQ8CEI3 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Ccdc28aQ8CEI3 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Ccdc28aQ8CEI3 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Ccdc28aQ8CEI3 Gm37166-201ENSMUST00000195473 2474 ntBASIC18.08■□□□□ 0.49
Ccdc28aQ8CEI3 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Ccdc28aQ8CEI3 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
Ccdc28aQ8CEI3 Tfap2a-209ENSMUST00000225180 1828 ntBASIC18.08■□□□□ 0.48
Ccdc28aQ8CEI3 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Ccdc28aQ8CEI3 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Ccdc28aQ8CEI3 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
Ccdc28aQ8CEI3 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Ccdc28aQ8CEI3 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Ccdc28aQ8CEI3 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC18.08■□□□□ 0.48
Ccdc28aQ8CEI3 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc28aQ8CEI3 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc28aQ8CEI3 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Ccdc28aQ8CEI3 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc28aQ8CEI3 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc28aQ8CEI3 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC18.07■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms