Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Mir6349-201ENSMUST00000184059 97 ntBASIC20.26■□□□□ 0.83
Nup88Q8CEC0 Gm37292-201ENSMUST00000192062 758 ntBASIC20.26■□□□□ 0.83
Nup88Q8CEC0 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC20.26■□□□□ 0.83
Nup88Q8CEC0 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nup88Q8CEC0 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nup88Q8CEC0 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nup88Q8CEC0 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nup88Q8CEC0 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nup88Q8CEC0 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nup88Q8CEC0 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nup88Q8CEC0 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nup88Q8CEC0 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC20.26■□□□□ 0.83
Nup88Q8CEC0 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nup88Q8CEC0 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Nup88Q8CEC0 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Nup88Q8CEC0 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nup88Q8CEC0 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nup88Q8CEC0 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nup88Q8CEC0 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Nup88Q8CEC0 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nup88Q8CEC0 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Nup88Q8CEC0 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC20.25■□□□□ 0.83
Nup88Q8CEC0 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nup88Q8CEC0 Gm43799-201ENSMUST00000201845 579 ntBASIC20.25■□□□□ 0.83
Nup88Q8CEC0 Gm42545-201ENSMUST00000202755 922 ntBASIC20.25■□□□□ 0.83
Nup88Q8CEC0 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC20.25■□□□□ 0.83
Nup88Q8CEC0 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nup88Q8CEC0 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Nup88Q8CEC0 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nup88Q8CEC0 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC20.25■□□□□ 0.83
Nup88Q8CEC0 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nup88Q8CEC0 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nup88Q8CEC0 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nup88Q8CEC0 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nup88Q8CEC0 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC20.25■□□□□ 0.83
Nup88Q8CEC0 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC20.24■□□□□ 0.83
Nup88Q8CEC0 Ddx41-204ENSMUST00000224765 2199 ntBASIC20.24■□□□□ 0.83
Nup88Q8CEC0 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Nup88Q8CEC0 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Nup88Q8CEC0 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
Nup88Q8CEC0 Gm16042-201ENSMUST00000204813 1247 ntBASIC20.24■□□□□ 0.83
Nup88Q8CEC0 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC20.24■□□□□ 0.83
Nup88Q8CEC0 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC20.24■□□□□ 0.83
Nup88Q8CEC0 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Nup88Q8CEC0 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Nup88Q8CEC0 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Nup88Q8CEC0 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Nup88Q8CEC0 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Nup88Q8CEC0 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
Nup88Q8CEC0 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Nup88Q8CEC0 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nup88Q8CEC0 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Nup88Q8CEC0 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nup88Q8CEC0 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC20.23■□□□□ 0.83
Nup88Q8CEC0 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Nup88Q8CEC0 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nup88Q8CEC0 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC20.23■□□□□ 0.83
Nup88Q8CEC0 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC20.23■□□□□ 0.83
Nup88Q8CEC0 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nup88Q8CEC0 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC20.23■□□□□ 0.83
Nup88Q8CEC0 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nup88Q8CEC0 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Nup88Q8CEC0 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Nup88Q8CEC0 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nup88Q8CEC0 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nup88Q8CEC0 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Nup88Q8CEC0 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Nup88Q8CEC0 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
Nup88Q8CEC0 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nup88Q8CEC0 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Nup88Q8CEC0 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC20.22■□□□□ 0.83
Nup88Q8CEC0 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nup88Q8CEC0 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
Nup88Q8CEC0 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
Nup88Q8CEC0 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC20.22■□□□□ 0.83
Nup88Q8CEC0 Odf3b-204ENSMUST00000227834 930 ntBASIC20.22■□□□□ 0.83
Nup88Q8CEC0 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nup88Q8CEC0 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nup88Q8CEC0 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC20.22■□□□□ 0.83
Nup88Q8CEC0 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nup88Q8CEC0 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nup88Q8CEC0 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nup88Q8CEC0 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nup88Q8CEC0 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nup88Q8CEC0 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Nup88Q8CEC0 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Nup88Q8CEC0 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Nup88Q8CEC0 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Nup88Q8CEC0 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC20.21■□□□□ 0.83
Nup88Q8CEC0 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Nup88Q8CEC0 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Nup88Q8CEC0 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Nup88Q8CEC0 Gm10231-201ENSMUST00000181584 441 ntBASIC20.21■□□□□ 0.83
Nup88Q8CEC0 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Nup88Q8CEC0 Gm10175-202ENSMUST00000208752 441 ntBASIC20.21■□□□□ 0.83
Nup88Q8CEC0 Arhgef4-208ENSMUST00000211073 171 ntBASIC20.21■□□□□ 0.83
Nup88Q8CEC0 AC130671.1-201ENSMUST00000227384 1237 ntBASIC20.21■□□□□ 0.83
Nup88Q8CEC0 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Nup88Q8CEC0 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Nup88Q8CEC0 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 79.6 ms