Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC20.24■□□□□ 0.83
Trim56Q80VI1 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Trim56Q80VI1 Gm18032-201ENSMUST00000222541 538 ntBASIC20.24■□□□□ 0.83
Trim56Q80VI1 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim56Q80VI1 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim56Q80VI1 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim56Q80VI1 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Trim56Q80VI1 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Trim56Q80VI1 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Trim56Q80VI1 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Trim56Q80VI1 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim56Q80VI1 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Trim56Q80VI1 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim56Q80VI1 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim56Q80VI1 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim56Q80VI1 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim56Q80VI1 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Trim56Q80VI1 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC20.23■□□□□ 0.83
Trim56Q80VI1 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC20.23■□□□□ 0.83
Trim56Q80VI1 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC20.23■□□□□ 0.83
Trim56Q80VI1 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim56Q80VI1 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC20.23■□□□□ 0.83
Trim56Q80VI1 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Trim56Q80VI1 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim56Q80VI1 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim56Q80VI1 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim56Q80VI1 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Trim56Q80VI1 AC154855.1-201ENSMUST00000227353 1458 ntBASIC20.23■□□□□ 0.83
Trim56Q80VI1 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC20.22■□□□□ 0.83
Trim56Q80VI1 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim56Q80VI1 Gm6598-201ENSMUST00000202719 2615 ntBASIC20.22■□□□□ 0.83
Trim56Q80VI1 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim56Q80VI1 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
Trim56Q80VI1 Gm3272-201ENSMUST00000181181 1229 ntBASIC20.22■□□□□ 0.83
Trim56Q80VI1 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim56Q80VI1 Gm10566-201ENSMUST00000086739 996 ntBASIC20.22■□□□□ 0.83
Trim56Q80VI1 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim56Q80VI1 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim56Q80VI1 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Trim56Q80VI1 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim56Q80VI1 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim56Q80VI1 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim56Q80VI1 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Trim56Q80VI1 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim56Q80VI1 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Trim56Q80VI1 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim56Q80VI1 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC20.21■□□□□ 0.83
Trim56Q80VI1 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC20.21■□□□□ 0.83
Trim56Q80VI1 Gm18958-201ENSMUST00000174258 762 ntBASIC20.21■□□□□ 0.83
Trim56Q80VI1 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Trim56Q80VI1 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Trim56Q80VI1 Gm43294-201ENSMUST00000202850 2490 ntBASIC20.21■□□□□ 0.83
Trim56Q80VI1 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim56Q80VI1 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim56Q80VI1 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim56Q80VI1 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Trim56Q80VI1 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim56Q80VI1 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
Trim56Q80VI1 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Trim56Q80VI1 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trim56Q80VI1 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trim56Q80VI1 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC20.2■□□□□ 0.82
Trim56Q80VI1 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Trim56Q80VI1 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Trim56Q80VI1 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC20.2■□□□□ 0.82
Trim56Q80VI1 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trim56Q80VI1 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trim56Q80VI1 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trim56Q80VI1 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trim56Q80VI1 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Trim56Q80VI1 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trim56Q80VI1 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Trim56Q80VI1 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim56Q80VI1 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC20.19■□□□□ 0.82
Trim56Q80VI1 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim56Q80VI1 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim56Q80VI1 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim56Q80VI1 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Trim56Q80VI1 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC20.19■□□□□ 0.82
Trim56Q80VI1 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Trim56Q80VI1 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC20.19■□□□□ 0.82
Trim56Q80VI1 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC20.19■□□□□ 0.82
Trim56Q80VI1 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim56Q80VI1 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim56Q80VI1 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim56Q80VI1 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim56Q80VI1 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim56Q80VI1 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trim56Q80VI1 Gm43338-201ENSMUST00000198617 2223 ntBASIC20.18■□□□□ 0.82
Trim56Q80VI1 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Trim56Q80VI1 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Trim56Q80VI1 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Trim56Q80VI1 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC20.18■□□□□ 0.82
Trim56Q80VI1 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC20.18■□□□□ 0.82
Trim56Q80VI1 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Trim56Q80VI1 Gm13474-201ENSMUST00000122466 815 ntBASIC20.18■□□□□ 0.82
Trim56Q80VI1 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Trim56Q80VI1 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trim56Q80VI1 Gm7213-201ENSMUST00000215977 950 ntBASIC20.18■□□□□ 0.82
Trim56Q80VI1 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms