Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC19.2■□□□□ 0.66
Usp49Q6P9L4 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC19.2■□□□□ 0.66
Usp49Q6P9L4 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC19.2■□□□□ 0.66
Usp49Q6P9L4 Otx2os1-204ENSMUST00000227221 751 ntBASIC19.2■□□□□ 0.66
Usp49Q6P9L4 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp49Q6P9L4 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Usp49Q6P9L4 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp49Q6P9L4 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Usp49Q6P9L4 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp49Q6P9L4 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Usp49Q6P9L4 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Usp49Q6P9L4 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp49Q6P9L4 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Usp49Q6P9L4 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC19.19■□□□□ 0.66
Usp49Q6P9L4 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp49Q6P9L4 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp49Q6P9L4 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp49Q6P9L4 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Usp49Q6P9L4 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp49Q6P9L4 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp49Q6P9L4 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp49Q6P9L4 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp49Q6P9L4 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp49Q6P9L4 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC19.19■□□□□ 0.66
Usp49Q6P9L4 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Usp49Q6P9L4 Gm38027-201ENSMUST00000192315 235 ntBASIC19.19■□□□□ 0.66
Usp49Q6P9L4 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp49Q6P9L4 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC19.19■□□□□ 0.66
Usp49Q6P9L4 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp49Q6P9L4 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp49Q6P9L4 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Usp49Q6P9L4 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp49Q6P9L4 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Usp49Q6P9L4 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp49Q6P9L4 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp49Q6P9L4 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp49Q6P9L4 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp49Q6P9L4 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp49Q6P9L4 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp49Q6P9L4 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp49Q6P9L4 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp49Q6P9L4 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC19.18■□□□□ 0.66
Usp49Q6P9L4 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC19.18■□□□□ 0.66
Usp49Q6P9L4 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC19.18■□□□□ 0.66
Usp49Q6P9L4 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp49Q6P9L4 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp49Q6P9L4 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp49Q6P9L4 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp49Q6P9L4 Gm45774-201ENSMUST00000211992 2665 ntBASIC19.18■□□□□ 0.66
Usp49Q6P9L4 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp49Q6P9L4 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp49Q6P9L4 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp49Q6P9L4 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp49Q6P9L4 Gm7638-201ENSMUST00000121348 967 ntBASIC19.17■□□□□ 0.66
Usp49Q6P9L4 Gm17661-201ENSMUST00000170317 270 ntBASIC19.17■□□□□ 0.66
Usp49Q6P9L4 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC19.17■□□□□ 0.66
Usp49Q6P9L4 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp49Q6P9L4 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp49Q6P9L4 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp49Q6P9L4 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp49Q6P9L4 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp49Q6P9L4 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp49Q6P9L4 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp49Q6P9L4 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp49Q6P9L4 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp49Q6P9L4 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Usp49Q6P9L4 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp49Q6P9L4 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp49Q6P9L4 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC19.16■□□□□ 0.66
Usp49Q6P9L4 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp49Q6P9L4 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp49Q6P9L4 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp49Q6P9L4 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Usp49Q6P9L4 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp49Q6P9L4 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC19.16■□□□□ 0.66
Usp49Q6P9L4 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Usp49Q6P9L4 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp49Q6P9L4 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp49Q6P9L4 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp49Q6P9L4 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Usp49Q6P9L4 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp49Q6P9L4 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Usp49Q6P9L4 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp49Q6P9L4 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp49Q6P9L4 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC19.15■□□□□ 0.66
Usp49Q6P9L4 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp49Q6P9L4 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp49Q6P9L4 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp49Q6P9L4 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC19.15■□□□□ 0.66
Usp49Q6P9L4 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC19.15■□□□□ 0.66
Usp49Q6P9L4 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC19.15■□□□□ 0.66
Usp49Q6P9L4 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp49Q6P9L4 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp49Q6P9L4 Gm10812-201ENSMUST00000099864 546 ntBASIC19.15■□□□□ 0.66
Usp49Q6P9L4 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Usp49Q6P9L4 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp49Q6P9L4 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Usp49Q6P9L4 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp49Q6P9L4 Gm26596-201ENSMUST00000180464 2655 ntBASIC19.15■□□□□ 0.66
Usp49Q6P9L4 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 21.5 ms