Protein–RNA interactions for Protein: Q62233

Six3, Homeobox protein SIX3, mousemouse

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six3Q62233 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Six3Q62233 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Six3Q62233 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Six3Q62233 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Six3Q62233 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Six3Q62233 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
Six3Q62233 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC16.78■□□□□ 0.28
Six3Q62233 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Six3Q62233 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Six3Q62233 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Six3Q62233 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Six3Q62233 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC16.78■□□□□ 0.28
Six3Q62233 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC16.78■□□□□ 0.28
Six3Q62233 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Six3Q62233 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Six3Q62233 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Six3Q62233 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Six3Q62233 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Six3Q62233 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Six3Q62233 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Six3Q62233 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Six3Q62233 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Six3Q62233 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
Six3Q62233 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Six3Q62233 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
Six3Q62233 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC16.77■□□□□ 0.28
Six3Q62233 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC16.77■□□□□ 0.28
Six3Q62233 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Six3Q62233 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC16.77■□□□□ 0.28
Six3Q62233 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Six3Q62233 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC16.77■□□□□ 0.28
Six3Q62233 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC16.77■□□□□ 0.28
Six3Q62233 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Six3Q62233 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Six3Q62233 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Six3Q62233 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Six3Q62233 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Six3Q62233 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Six3Q62233 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Six3Q62233 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Six3Q62233 Gm12382-201ENSMUST00000122005 922 ntBASIC16.76■□□□□ 0.27
Six3Q62233 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC16.76■□□□□ 0.27
Six3Q62233 Trmt13-210ENSMUST00000198454 880 ntBASIC16.76■□□□□ 0.27
Six3Q62233 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Six3Q62233 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Six3Q62233 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Six3Q62233 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Six3Q62233 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Six3Q62233 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Six3Q62233 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Six3Q62233 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Six3Q62233 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Six3Q62233 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Six3Q62233 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Six3Q62233 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC16.75■□□□□ 0.27
Six3Q62233 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Six3Q62233 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Six3Q62233 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC16.75■□□□□ 0.27
Six3Q62233 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC16.75■□□□□ 0.27
Six3Q62233 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC16.75■□□□□ 0.27
Six3Q62233 Nrn1-203ENSMUST00000223611 1443 ntBASIC16.75■□□□□ 0.27
Six3Q62233 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Six3Q62233 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Six3Q62233 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Six3Q62233 Tfap2a-209ENSMUST00000225180 1828 ntBASIC16.75■□□□□ 0.27
Six3Q62233 Gm11841-201ENSMUST00000117060 1963 ntBASIC16.75■□□□□ 0.27
Six3Q62233 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Six3Q62233 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Six3Q62233 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Six3Q62233 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Six3Q62233 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Six3Q62233 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Six3Q62233 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Six3Q62233 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Six3Q62233 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Six3Q62233 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Six3Q62233 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Six3Q62233 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Six3Q62233 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC16.74■□□□□ 0.27
Six3Q62233 H2-K2-201ENSMUST00000174250 1049 ntBASIC16.74■□□□□ 0.27
Six3Q62233 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC16.74■□□□□ 0.27
Six3Q62233 Gm18666-201ENSMUST00000190039 958 ntBASIC16.74■□□□□ 0.27
Six3Q62233 Gm4974-201ENSMUST00000209974 875 ntBASIC16.74■□□□□ 0.27
Six3Q62233 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC16.74■□□□□ 0.27
Six3Q62233 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Six3Q62233 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Six3Q62233 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Six3Q62233 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Six3Q62233 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Six3Q62233 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Six3Q62233 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Six3Q62233 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Six3Q62233 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Six3Q62233 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Six3Q62233 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC16.73■□□□□ 0.27
Six3Q62233 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC16.73■□□□□ 0.27
Six3Q62233 Gm10517-202ENSMUST00000192970 758 ntBASIC16.73■□□□□ 0.27
Six3Q62233 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Six3Q62233 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Six3Q62233 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms