Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Vps54Q5SPW0 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Vps54Q5SPW0 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Vps54Q5SPW0 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Vps54Q5SPW0 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Vps54Q5SPW0 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Vps54Q5SPW0 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Vps54Q5SPW0 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Vps54Q5SPW0 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
Vps54Q5SPW0 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Vps54Q5SPW0 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Vps54Q5SPW0 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Vps54Q5SPW0 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC20.6■□□□□ 0.89
Vps54Q5SPW0 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Vps54Q5SPW0 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC20.6■□□□□ 0.89
Vps54Q5SPW0 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Vps54Q5SPW0 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Vps54Q5SPW0 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Vps54Q5SPW0 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC20.59■□□□□ 0.89
Vps54Q5SPW0 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Vps54Q5SPW0 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Vps54Q5SPW0 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Vps54Q5SPW0 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Vps54Q5SPW0 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Vps54Q5SPW0 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Vps54Q5SPW0 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Vps54Q5SPW0 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Vps54Q5SPW0 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Vps54Q5SPW0 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Vps54Q5SPW0 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Vps54Q5SPW0 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Vps54Q5SPW0 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Vps54Q5SPW0 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC20.58■□□□□ 0.89
Vps54Q5SPW0 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Vps54Q5SPW0 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
Vps54Q5SPW0 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
Vps54Q5SPW0 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Vps54Q5SPW0 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Vps54Q5SPW0 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Vps54Q5SPW0 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Vps54Q5SPW0 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Vps54Q5SPW0 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Vps54Q5SPW0 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Vps54Q5SPW0 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC20.58■□□□□ 0.88
Vps54Q5SPW0 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Vps54Q5SPW0 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Vps54Q5SPW0 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Vps54Q5SPW0 Spsb2-203ENSMUST00000112473 1322 ntBASIC20.57■□□□□ 0.88
Vps54Q5SPW0 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Vps54Q5SPW0 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Vps54Q5SPW0 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Vps54Q5SPW0 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Vps54Q5SPW0 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Vps54Q5SPW0 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC20.57■□□□□ 0.88
Vps54Q5SPW0 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Vps54Q5SPW0 Gm18032-201ENSMUST00000222541 538 ntBASIC20.57■□□□□ 0.88
Vps54Q5SPW0 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Vps54Q5SPW0 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Vps54Q5SPW0 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Vps54Q5SPW0 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Vps54Q5SPW0 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Vps54Q5SPW0 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Vps54Q5SPW0 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Vps54Q5SPW0 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC20.56■□□□□ 0.88
Vps54Q5SPW0 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Vps54Q5SPW0 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC20.56■□□□□ 0.88
Vps54Q5SPW0 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Vps54Q5SPW0 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC20.56■□□□□ 0.88
Vps54Q5SPW0 Gm18958-201ENSMUST00000174258 762 ntBASIC20.56■□□□□ 0.88
Vps54Q5SPW0 Gm27000-201ENSMUST00000182943 842 ntBASIC20.56■□□□□ 0.88
Vps54Q5SPW0 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC20.56■□□□□ 0.88
Vps54Q5SPW0 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Vps54Q5SPW0 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Vps54Q5SPW0 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Vps54Q5SPW0 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Vps54Q5SPW0 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Vps54Q5SPW0 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC20.56■□□□□ 0.88
Vps54Q5SPW0 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Vps54Q5SPW0 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Vps54Q5SPW0 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Vps54Q5SPW0 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Vps54Q5SPW0 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Vps54Q5SPW0 Gm3272-201ENSMUST00000181181 1229 ntBASIC20.55■□□□□ 0.88
Vps54Q5SPW0 Gm7977-201ENSMUST00000193787 748 ntBASIC20.55■□□□□ 0.88
Vps54Q5SPW0 Gm10566-201ENSMUST00000086739 996 ntBASIC20.55■□□□□ 0.88
Vps54Q5SPW0 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Vps54Q5SPW0 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Vps54Q5SPW0 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Vps54Q5SPW0 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC20.55■□□□□ 0.88
Vps54Q5SPW0 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Vps54Q5SPW0 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Vps54Q5SPW0 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Vps54Q5SPW0 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Vps54Q5SPW0 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Vps54Q5SPW0 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
Vps54Q5SPW0 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC20.54■□□□□ 0.88
Vps54Q5SPW0 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Vps54Q5SPW0 Tfap2a-209ENSMUST00000225180 1828 ntBASIC20.54■□□□□ 0.88
Vps54Q5SPW0 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Vps54Q5SPW0 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 17.8 ms