Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usp28Q5I043 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC19.49■□□□□ 0.71
Usp28Q5I043 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Usp28Q5I043 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usp28Q5I043 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC19.48■□□□□ 0.71
Usp28Q5I043 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Usp28Q5I043 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Usp28Q5I043 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC19.48■□□□□ 0.71
Usp28Q5I043 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Usp28Q5I043 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC19.48■□□□□ 0.71
Usp28Q5I043 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Usp28Q5I043 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Usp28Q5I043 Gm43183-201ENSMUST00000200632 547 ntBASIC19.48■□□□□ 0.71
Usp28Q5I043 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Usp28Q5I043 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Usp28Q5I043 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Usp28Q5I043 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Usp28Q5I043 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Usp28Q5I043 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Usp28Q5I043 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Usp28Q5I043 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Usp28Q5I043 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Usp28Q5I043 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Usp28Q5I043 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Usp28Q5I043 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Usp28Q5I043 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC19.48■□□□□ 0.71
Usp28Q5I043 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Usp28Q5I043 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Usp28Q5I043 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Usp28Q5I043 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Usp28Q5I043 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Usp28Q5I043 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
Usp28Q5I043 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Usp28Q5I043 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC19.47■□□□□ 0.71
Usp28Q5I043 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC19.47■□□□□ 0.71
Usp28Q5I043 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC19.47■□□□□ 0.71
Usp28Q5I043 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Usp28Q5I043 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
Usp28Q5I043 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Usp28Q5I043 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Usp28Q5I043 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC19.47■□□□□ 0.71
Usp28Q5I043 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Usp28Q5I043 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Usp28Q5I043 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Usp28Q5I043 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Usp28Q5I043 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Usp28Q5I043 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Usp28Q5I043 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Usp28Q5I043 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Usp28Q5I043 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Usp28Q5I043 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Usp28Q5I043 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Usp28Q5I043 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Usp28Q5I043 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Usp28Q5I043 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Usp28Q5I043 Nrn1-203ENSMUST00000223611 1443 ntBASIC19.46■□□□□ 0.71
Usp28Q5I043 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Usp28Q5I043 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Usp28Q5I043 Trmt13-210ENSMUST00000198454 880 ntBASIC19.46■□□□□ 0.71
Usp28Q5I043 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Usp28Q5I043 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Usp28Q5I043 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Usp28Q5I043 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
Usp28Q5I043 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Usp28Q5I043 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Usp28Q5I043 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Usp28Q5I043 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Usp28Q5I043 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Usp28Q5I043 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Usp28Q5I043 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Usp28Q5I043 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Usp28Q5I043 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Usp28Q5I043 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Usp28Q5I043 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Usp28Q5I043 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Usp28Q5I043 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Usp28Q5I043 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
Usp28Q5I043 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Usp28Q5I043 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
Usp28Q5I043 Gm15039-201ENSMUST00000118914 875 ntBASIC19.45■□□□□ 0.7
Usp28Q5I043 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC19.45■□□□□ 0.7
Usp28Q5I043 H2-K2-201ENSMUST00000174250 1049 ntBASIC19.45■□□□□ 0.7
Usp28Q5I043 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC19.45■□□□□ 0.7
Usp28Q5I043 Gm18666-201ENSMUST00000190039 958 ntBASIC19.45■□□□□ 0.7
Usp28Q5I043 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Usp28Q5I043 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Usp28Q5I043 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Usp28Q5I043 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Usp28Q5I043 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Usp28Q5I043 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Usp28Q5I043 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usp28Q5I043 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usp28Q5I043 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usp28Q5I043 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usp28Q5I043 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usp28Q5I043 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Usp28Q5I043 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usp28Q5I043 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Usp28Q5I043 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usp28Q5I043 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms