Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Phf7-203ENSMUST00000226565 1971 ntBASIC20.21■□□□□ 0.83
Rnf180Q3U827 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Rnf180Q3U827 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rnf180Q3U827 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Rnf180Q3U827 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC20.21■□□□□ 0.83
Rnf180Q3U827 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rnf180Q3U827 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rnf180Q3U827 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rnf180Q3U827 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Rnf180Q3U827 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rnf180Q3U827 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC20.2■□□□□ 0.82
Rnf180Q3U827 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rnf180Q3U827 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC20.2■□□□□ 0.82
Rnf180Q3U827 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
Rnf180Q3U827 CT025535.1-201ENSMUST00000227172 491 ntBASIC20.2■□□□□ 0.82
Rnf180Q3U827 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rnf180Q3U827 AC124392.1-201ENSMUST00000225172 5324 ntBASIC20.2■□□□□ 0.82
Rnf180Q3U827 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rnf180Q3U827 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Rnf180Q3U827 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rnf180Q3U827 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rnf180Q3U827 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rnf180Q3U827 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rnf180Q3U827 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rnf180Q3U827 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rnf180Q3U827 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rnf180Q3U827 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rnf180Q3U827 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rnf180Q3U827 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Rnf180Q3U827 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
Rnf180Q3U827 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC20.19■□□□□ 0.82
Rnf180Q3U827 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Rnf180Q3U827 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rnf180Q3U827 Gm17271-201ENSMUST00000165535 355 ntBASIC20.19■□□□□ 0.82
Rnf180Q3U827 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC20.19■□□□□ 0.82
Rnf180Q3U827 Med10-204ENSMUST00000221893 815 ntTSL 2 BASIC20.19■□□□□ 0.82
Rnf180Q3U827 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rnf180Q3U827 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rnf180Q3U827 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rnf180Q3U827 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rnf180Q3U827 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rnf180Q3U827 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rnf180Q3U827 Gm10322-201ENSMUST00000095646 336 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Rnf180Q3U827 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Rnf180Q3U827 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Rnf180Q3U827 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rnf180Q3U827 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rnf180Q3U827 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rnf180Q3U827 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rnf180Q3U827 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC20.18■□□□□ 0.82
Rnf180Q3U827 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Rnf180Q3U827 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Rnf180Q3U827 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rnf180Q3U827 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC20.18■□□□□ 0.82
Rnf180Q3U827 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC20.18■□□□□ 0.82
Rnf180Q3U827 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
Rnf180Q3U827 Gm7506-201ENSMUST00000207758 815 ntBASIC20.18■□□□□ 0.82
Rnf180Q3U827 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC20.18■□□□□ 0.82
Rnf180Q3U827 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rnf180Q3U827 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Rnf180Q3U827 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rnf180Q3U827 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Rnf180Q3U827 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Rnf180Q3U827 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Rnf180Q3U827 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rnf180Q3U827 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Rnf180Q3U827 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Rnf180Q3U827 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Rnf180Q3U827 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rnf180Q3U827 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Rnf180Q3U827 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Rnf180Q3U827 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Rnf180Q3U827 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
Rnf180Q3U827 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Rnf180Q3U827 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Rnf180Q3U827 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC20.17■□□□□ 0.82
Rnf180Q3U827 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rnf180Q3U827 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Rnf180Q3U827 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rnf180Q3U827 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rnf180Q3U827 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rnf180Q3U827 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rnf180Q3U827 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rnf180Q3U827 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rnf180Q3U827 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Rnf180Q3U827 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rnf180Q3U827 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC20.16■□□□□ 0.82
Rnf180Q3U827 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC20.16■□□□□ 0.82
Rnf180Q3U827 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rnf180Q3U827 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
Rnf180Q3U827 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC20.16■□□□□ 0.82
Rnf180Q3U827 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC20.16■□□□□ 0.82
Rnf180Q3U827 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
Rnf180Q3U827 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rnf180Q3U827 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Rnf180Q3U827 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Rnf180Q3U827 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rnf180Q3U827 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rnf180Q3U827 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rnf180Q3U827 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms