Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC21.8■■□□□ 1.08
Ddb1Q3U1J4 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Ddb1Q3U1J4 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Ddb1Q3U1J4 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
Ddb1Q3U1J4 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Ddb1Q3U1J4 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Ddb1Q3U1J4 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Ddb1Q3U1J4 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Ddb1Q3U1J4 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Ddb1Q3U1J4 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
Ddb1Q3U1J4 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Ddb1Q3U1J4 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Ddb1Q3U1J4 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC21.79■■□□□ 1.08
Ddb1Q3U1J4 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC21.79■■□□□ 1.08
Ddb1Q3U1J4 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Ddb1Q3U1J4 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC21.79■■□□□ 1.08
Ddb1Q3U1J4 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ddb1Q3U1J4 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC21.78■■□□□ 1.08
Ddb1Q3U1J4 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ddb1Q3U1J4 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Ddb1Q3U1J4 Gm27867-201ENSMUST00000184778 125 ntBASIC21.78■■□□□ 1.08
Ddb1Q3U1J4 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC21.78■■□□□ 1.08
Ddb1Q3U1J4 Gm13830-205ENSMUST00000201195 1155 ntBASIC21.78■■□□□ 1.08
Ddb1Q3U1J4 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ddb1Q3U1J4 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ddb1Q3U1J4 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ddb1Q3U1J4 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ddb1Q3U1J4 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Ddb1Q3U1J4 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ddb1Q3U1J4 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ddb1Q3U1J4 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ddb1Q3U1J4 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ddb1Q3U1J4 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ddb1Q3U1J4 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ddb1Q3U1J4 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC21.77■■□□□ 1.08
Ddb1Q3U1J4 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ddb1Q3U1J4 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ddb1Q3U1J4 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Ddb1Q3U1J4 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC21.77■■□□□ 1.08
Ddb1Q3U1J4 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ddb1Q3U1J4 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ddb1Q3U1J4 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ddb1Q3U1J4 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ddb1Q3U1J4 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Ddb1Q3U1J4 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Ddb1Q3U1J4 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Ddb1Q3U1J4 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
Ddb1Q3U1J4 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ddb1Q3U1J4 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ddb1Q3U1J4 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Ddb1Q3U1J4 Gm18856-201ENSMUST00000178096 1374 ntBASIC21.76■■□□□ 1.07
Ddb1Q3U1J4 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ddb1Q3U1J4 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ddb1Q3U1J4 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ddb1Q3U1J4 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ddb1Q3U1J4 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ddb1Q3U1J4 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ddb1Q3U1J4 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ddb1Q3U1J4 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC21.75■■□□□ 1.07
Ddb1Q3U1J4 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ddb1Q3U1J4 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Ddb1Q3U1J4 Gm15165-201ENSMUST00000118140 502 ntBASIC21.75■■□□□ 1.07
Ddb1Q3U1J4 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
Ddb1Q3U1J4 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC21.75■■□□□ 1.07
Ddb1Q3U1J4 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ddb1Q3U1J4 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ddb1Q3U1J4 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC21.75■■□□□ 1.07
Ddb1Q3U1J4 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
Ddb1Q3U1J4 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ddb1Q3U1J4 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ddb1Q3U1J4 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ddb1Q3U1J4 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC21.75■■□□□ 1.07
Ddb1Q3U1J4 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ddb1Q3U1J4 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ddb1Q3U1J4 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ddb1Q3U1J4 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ddb1Q3U1J4 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC21.74■■□□□ 1.07
Ddb1Q3U1J4 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ddb1Q3U1J4 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ddb1Q3U1J4 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
Ddb1Q3U1J4 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ddb1Q3U1J4 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ddb1Q3U1J4 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ddb1Q3U1J4 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ddb1Q3U1J4 Gm11779-201ENSMUST00000118541 368 ntBASIC21.74■■□□□ 1.07
Ddb1Q3U1J4 Gm5264-201ENSMUST00000190584 848 ntBASIC21.74■■□□□ 1.07
Ddb1Q3U1J4 Gm29707-201ENSMUST00000196325 491 ntBASIC21.74■■□□□ 1.07
Ddb1Q3U1J4 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC21.74■■□□□ 1.07
Ddb1Q3U1J4 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC21.74■■□□□ 1.07
Ddb1Q3U1J4 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ddb1Q3U1J4 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
Ddb1Q3U1J4 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ddb1Q3U1J4 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Ddb1Q3U1J4 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Ddb1Q3U1J4 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ddb1Q3U1J4 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ddb1Q3U1J4 Gm6190-201ENSMUST00000220683 1374 ntBASIC21.74■■□□□ 1.07
Ddb1Q3U1J4 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ddb1Q3U1J4 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Ddb1Q3U1J4 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms