Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Sox3P53784 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Sox3P53784 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Sox3P53784 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Sox3P53784 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Sox3P53784 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Sox3P53784 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Sox3P53784 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Sox3P53784 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Sox3P53784 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Sox3P53784 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Sox3P53784 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC16.41■□□□□ 0.22
Sox3P53784 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Sox3P53784 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
Sox3P53784 Gm27463-201ENSMUST00000183569 57 ntBASIC16.41■□□□□ 0.22
Sox3P53784 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Sox3P53784 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Sox3P53784 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Sox3P53784 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC16.41■□□□□ 0.22
Sox3P53784 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Sox3P53784 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Sox3P53784 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Sox3P53784 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Sox3P53784 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Sox3P53784 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Sox3P53784 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Sox3P53784 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Sox3P53784 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Sox3P53784 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Sox3P53784 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Sox3P53784 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Sox3P53784 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC16.4■□□□□ 0.22
Sox3P53784 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Sox3P53784 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Sox3P53784 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC16.4■□□□□ 0.22
Sox3P53784 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Sox3P53784 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Sox3P53784 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Sox3P53784 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Sox3P53784 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Sox3P53784 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC16.4■□□□□ 0.22
Sox3P53784 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
Sox3P53784 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Sox3P53784 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Sox3P53784 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Sox3P53784 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Sox3P53784 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Sox3P53784 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Sox3P53784 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Sox3P53784 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Sox3P53784 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Sox3P53784 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Sox3P53784 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Sox3P53784 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Sox3P53784 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Sox3P53784 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC16.39■□□□□ 0.21
Sox3P53784 Gm7153-201ENSMUST00000117092 455 ntBASIC16.39■□□□□ 0.21
Sox3P53784 Gm22697-201ENSMUST00000175194 63 ntBASIC16.39■□□□□ 0.21
Sox3P53784 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Sox3P53784 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Sox3P53784 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Sox3P53784 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Sox3P53784 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Sox3P53784 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Sox3P53784 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
Sox3P53784 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Sox3P53784 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Sox3P53784 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Sox3P53784 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Sox3P53784 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Sox3P53784 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Sox3P53784 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC16.38■□□□□ 0.21
Sox3P53784 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC16.38■□□□□ 0.21
Sox3P53784 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC16.38■□□□□ 0.21
Sox3P53784 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Sox3P53784 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Sox3P53784 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Sox3P53784 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Sox3P53784 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
Sox3P53784 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Sox3P53784 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Sox3P53784 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Sox3P53784 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Sox3P53784 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Sox3P53784 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Sox3P53784 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC16.37■□□□□ 0.21
Sox3P53784 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Sox3P53784 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Sox3P53784 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
Sox3P53784 Gm27704-201ENSMUST00000185094 107 ntBASIC16.37■□□□□ 0.21
Sox3P53784 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC16.37■□□□□ 0.21
Sox3P53784 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Sox3P53784 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Sox3P53784 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Sox3P53784 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Sox3P53784 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Sox3P53784 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
Sox3P53784 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Sox3P53784 Gm45244-201ENSMUST00000211328 2200 ntBASIC16.37■□□□□ 0.21
Sox3P53784 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms