Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Shmt1P50431 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Shmt1P50431 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Shmt1P50431 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Shmt1P50431 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Shmt1P50431 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC18.14■□□□□ 0.49
Shmt1P50431 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Shmt1P50431 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Shmt1P50431 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Shmt1P50431 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Shmt1P50431 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Shmt1P50431 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Shmt1P50431 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Shmt1P50431 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Shmt1P50431 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Shmt1P50431 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Shmt1P50431 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
Shmt1P50431 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Shmt1P50431 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Shmt1P50431 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Shmt1P50431 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC18.13■□□□□ 0.49
Shmt1P50431 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Shmt1P50431 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Shmt1P50431 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Shmt1P50431 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Shmt1P50431 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC18.13■□□□□ 0.49
Shmt1P50431 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Shmt1P50431 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Shmt1P50431 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Shmt1P50431 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Shmt1P50431 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
Shmt1P50431 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Shmt1P50431 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
Shmt1P50431 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Shmt1P50431 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Shmt1P50431 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Shmt1P50431 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Shmt1P50431 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Shmt1P50431 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Shmt1P50431 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
Shmt1P50431 Gm16061-201ENSMUST00000122167 857 ntBASIC18.12■□□□□ 0.49
Shmt1P50431 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC18.12■□□□□ 0.49
Shmt1P50431 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Shmt1P50431 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Shmt1P50431 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Shmt1P50431 Gm16499-203ENSMUST00000204633 2177 ntBASIC18.12■□□□□ 0.49
Shmt1P50431 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
Shmt1P50431 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Shmt1P50431 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Shmt1P50431 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Shmt1P50431 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Shmt1P50431 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Shmt1P50431 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Shmt1P50431 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Shmt1P50431 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Shmt1P50431 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC18.12■□□□□ 0.49
Shmt1P50431 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Shmt1P50431 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Shmt1P50431 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Shmt1P50431 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Shmt1P50431 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Shmt1P50431 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Shmt1P50431 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Shmt1P50431 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Shmt1P50431 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Shmt1P50431 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC18.11■□□□□ 0.49
Shmt1P50431 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Shmt1P50431 Gm18032-201ENSMUST00000222541 538 ntBASIC18.11■□□□□ 0.49
Shmt1P50431 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Shmt1P50431 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Shmt1P50431 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Shmt1P50431 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Shmt1P50431 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Shmt1P50431 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Shmt1P50431 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Shmt1P50431 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC18.1■□□□□ 0.49
Shmt1P50431 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Shmt1P50431 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Shmt1P50431 Spsb2-203ENSMUST00000112473 1322 ntBASIC18.1■□□□□ 0.49
Shmt1P50431 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Shmt1P50431 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Shmt1P50431 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Shmt1P50431 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Shmt1P50431 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Shmt1P50431 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Shmt1P50431 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Shmt1P50431 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Shmt1P50431 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Shmt1P50431 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Shmt1P50431 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Shmt1P50431 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Shmt1P50431 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Shmt1P50431 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Shmt1P50431 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Shmt1P50431 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Shmt1P50431 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Shmt1P50431 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Shmt1P50431 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Shmt1P50431 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Shmt1P50431 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC18.08■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms