Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC16.28■□□□□ 0.2
Cdx2P43241 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC16.28■□□□□ 0.2
Cdx2P43241 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Cdx2P43241 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Cdx2P43241 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cdx2P43241 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
Cdx2P43241 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Cdx2P43241 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Cdx2P43241 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Cdx2P43241 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Cdx2P43241 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cdx2P43241 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cdx2P43241 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Cdx2P43241 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cdx2P43241 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cdx2P43241 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cdx2P43241 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Cdx2P43241 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cdx2P43241 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cdx2P43241 Grk6-206ENSMUST00000224995 2971 ntBASIC16.27■□□□□ 0.2
Cdx2P43241 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cdx2P43241 Gm13884-201ENSMUST00000118103 829 ntBASIC16.27■□□□□ 0.2
Cdx2P43241 Gm27000-201ENSMUST00000182943 842 ntBASIC16.27■□□□□ 0.2
Cdx2P43241 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cdx2P43241 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
Cdx2P43241 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cdx2P43241 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cdx2P43241 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cdx2P43241 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cdx2P43241 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Cdx2P43241 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cdx2P43241 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
Cdx2P43241 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC16.27■□□□□ 0.19
Cdx2P43241 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cdx2P43241 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cdx2P43241 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cdx2P43241 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cdx2P43241 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC16.27■□□□□ 0.19
Cdx2P43241 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Cdx2P43241 Zkscan4-202ENSMUST00000225845 1506 ntBASIC16.26■□□□□ 0.19
Cdx2P43241 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC16.26■□□□□ 0.19
Cdx2P43241 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cdx2P43241 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cdx2P43241 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
Cdx2P43241 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Cdx2P43241 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC16.26■□□□□ 0.19
Cdx2P43241 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Cdx2P43241 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC16.26■□□□□ 0.19
Cdx2P43241 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Cdx2P43241 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cdx2P43241 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Cdx2P43241 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Cdx2P43241 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cdx2P43241 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cdx2P43241 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cdx2P43241 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Cdx2P43241 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cdx2P43241 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cdx2P43241 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cdx2P43241 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cdx2P43241 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC16.25■□□□□ 0.19
Cdx2P43241 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cdx2P43241 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cdx2P43241 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Cdx2P43241 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC16.25■□□□□ 0.19
Cdx2P43241 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cdx2P43241 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Cdx2P43241 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC16.24■□□□□ 0.19
Cdx2P43241 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Cdx2P43241 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Cdx2P43241 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC16.24■□□□□ 0.19
Cdx2P43241 Gm13186-201ENSMUST00000118031 316 ntBASIC16.24■□□□□ 0.19
Cdx2P43241 AC153889.1-201ENSMUST00000219257 330 ntBASIC16.24■□□□□ 0.19
Cdx2P43241 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Cdx2P43241 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Cdx2P43241 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Cdx2P43241 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Cdx2P43241 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Cdx2P43241 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdx2P43241 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Cdx2P43241 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdx2P43241 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdx2P43241 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Cdx2P43241 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdx2P43241 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdx2P43241 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdx2P43241 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdx2P43241 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdx2P43241 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdx2P43241 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Cdx2P43241 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC16.23■□□□□ 0.19
Cdx2P43241 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC16.23■□□□□ 0.19
Cdx2P43241 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Cdx2P43241 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdx2P43241 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Cdx2P43241 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdx2P43241 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC16.23■□□□□ 0.19
Cdx2P43241 Phf7-203ENSMUST00000226565 1971 ntBASIC16.23■□□□□ 0.19
Cdx2P43241 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdx2P43241 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 15.7 ms