Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Msh3P13705 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Msh3P13705 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Msh3P13705 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC18.86■□□□□ 0.61
Msh3P13705 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Msh3P13705 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Msh3P13705 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Msh3P13705 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Msh3P13705 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Msh3P13705 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Msh3P13705 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Msh3P13705 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Msh3P13705 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC18.85■□□□□ 0.61
Msh3P13705 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Msh3P13705 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Msh3P13705 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Msh3P13705 Gm13216-201ENSMUST00000117145 591 ntBASIC18.85■□□□□ 0.61
Msh3P13705 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Msh3P13705 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Msh3P13705 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Msh3P13705 Gm43353-201ENSMUST00000199224 1295 ntBASIC18.85■□□□□ 0.61
Msh3P13705 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Msh3P13705 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Msh3P13705 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Msh3P13705 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Msh3P13705 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Msh3P13705 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC18.84■□□□□ 0.61
Msh3P13705 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Msh3P13705 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Msh3P13705 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Msh3P13705 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
Msh3P13705 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Msh3P13705 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Msh3P13705 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC18.84■□□□□ 0.61
Msh3P13705 AC107711.5-202ENSMUST00000226429 702 ntBASIC18.84■□□□□ 0.61
Msh3P13705 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Msh3P13705 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Msh3P13705 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Msh3P13705 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Msh3P13705 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Msh3P13705 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Msh3P13705 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Msh3P13705 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Msh3P13705 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Msh3P13705 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Msh3P13705 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
Msh3P13705 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC18.83■□□□□ 0.61
Msh3P13705 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Msh3P13705 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
Msh3P13705 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Msh3P13705 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Msh3P13705 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC18.83■□□□□ 0.6
Msh3P13705 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Msh3P13705 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
Msh3P13705 Gm5297-201ENSMUST00000198555 1171 ntBASIC18.83■□□□□ 0.6
Msh3P13705 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
Msh3P13705 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC18.83■□□□□ 0.6
Msh3P13705 Cxcl14-202ENSMUST00000224801 1467 ntBASIC18.83■□□□□ 0.6
Msh3P13705 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Msh3P13705 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
Msh3P13705 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC18.82■□□□□ 0.6
Msh3P13705 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Msh3P13705 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Msh3P13705 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC18.82■□□□□ 0.6
Msh3P13705 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Msh3P13705 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Msh3P13705 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Msh3P13705 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Msh3P13705 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Msh3P13705 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Msh3P13705 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC18.82■□□□□ 0.6
Msh3P13705 Gm27463-201ENSMUST00000183569 57 ntBASIC18.82■□□□□ 0.6
Msh3P13705 Gm37055-201ENSMUST00000191866 133 ntBASIC18.82■□□□□ 0.6
Msh3P13705 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Msh3P13705 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Msh3P13705 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Msh3P13705 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Msh3P13705 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Msh3P13705 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Msh3P13705 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Msh3P13705 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Msh3P13705 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Msh3P13705 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Msh3P13705 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Msh3P13705 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Msh3P13705 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC18.81■□□□□ 0.6
Msh3P13705 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Msh3P13705 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Msh3P13705 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Msh3P13705 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Msh3P13705 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Msh3P13705 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC18.81■□□□□ 0.6
Msh3P13705 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Msh3P13705 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Msh3P13705 Gm4217-201ENSMUST00000182243 1002 ntBASIC18.81■□□□□ 0.6
Msh3P13705 AL672049.1-201ENSMUST00000197943 91 ntBASIC18.81■□□□□ 0.6
Msh3P13705 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC18.81■□□□□ 0.6
Msh3P13705 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Msh3P13705 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Msh3P13705 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 43.9 ms