Protein–RNA interactions for Protein: Q9D5Y1

Ccdc39, Coiled-coil domain-containing protein 39, mousemouse

Predictions only

Length 937 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc39Q9D5Y1 C87977-201ENSMUST00000105753 2446 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 Gm22091-201ENSMUST00000116908 127 ntBASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 Gm12598-201ENSMUST00000117333 830 ntBASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 Gm15659-201ENSMUST00000118881 341 ntBASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 Gm14506-201ENSMUST00000121165 536 ntBASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 Gm12639-201ENSMUST00000121400 493 ntBASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 Gm8880-201ENSMUST00000121800 454 ntBASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 Gm11819-201ENSMUST00000122192 372 ntBASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 Gm7209-201ENSMUST00000122339 333 ntBASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 Gm15243-201ENSMUST00000151101 382 ntTSL 2 BASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 Gm25153-201ENSMUST00000157118 156 ntBASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 Vmn1r-ps85-201ENSMUST00000173029 890 ntBASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 Gm28560-201ENSMUST00000186091 315 ntBASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 Gm28334-201ENSMUST00000186653 315 ntBASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 Gm28495-201ENSMUST00000188452 315 ntBASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 Gm28232-201ENSMUST00000188683 315 ntBASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 Gm28481-201ENSMUST00000189231 315 ntBASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 Gm29059-201ENSMUST00000191534 315 ntBASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 Gm37765-201ENSMUST00000192395 315 ntBASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 Gm37281-201ENSMUST00000192412 439 ntBASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 Gm37237-201ENSMUST00000192893 315 ntBASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 Gm36968-201ENSMUST00000193737 315 ntBASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 Gm38290-201ENSMUST00000195238 315 ntBASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 Gm43810-201ENSMUST00000201018 232 ntBASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 Gm45658-201ENSMUST00000209197 580 ntBASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 Gm18252-203ENSMUST00000215855 757 ntBASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 4930543K20Rik-201ENSMUST00000217044 355 ntBASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 CAAA01090905.1-201ENSMUST00000219056 426 ntTSL 2 BASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 Gm18026-201ENSMUST00000222789 727 ntBASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 AC125523.1-201ENSMUST00000228018 934 ntBASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 Rps15a-ps2-201ENSMUST00000087473 393 ntBASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 Olfr1161-202ENSMUST00000214438 3675 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 E430014B02Rik-201ENSMUST00000194215 3156 ntBASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 Lrp1b-209ENSMUST00000185258 1874 ntTSL 5 BASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 Olfr394-203ENSMUST00000216608 5628 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 Slitrk6-201ENSMUST00000078386 4240 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
Ccdc39Q9D5Y1 AC153526.2-201ENSMUST00000218206 2031 ntBASIC3.19□□□□□ -1.9
Ccdc39Q9D5Y1 Gm43230-201ENSMUST00000200980 2129 ntBASIC3.19□□□□□ -1.9
Ccdc39Q9D5Y1 Gm45104-201ENSMUST00000208748 4350 ntBASIC3.19□□□□□ -1.9
Ccdc39Q9D5Y1 Vmn1r2-201ENSMUST00000105160 921 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
Ccdc39Q9D5Y1 Mir1195-201ENSMUST00000116818 98 ntBASIC3.19□□□□□ -1.9
Ccdc39Q9D5Y1 Gm11221-201ENSMUST00000117230 597 ntBASIC3.19□□□□□ -1.9
Ccdc39Q9D5Y1 Gm12697-201ENSMUST00000118008 667 ntBASIC3.19□□□□□ -1.9
Ccdc39Q9D5Y1 Gm25052-201ENSMUST00000122661 158 ntBASIC3.19□□□□□ -1.9
Ccdc39Q9D5Y1 Gm22330-201ENSMUST00000158068 115 ntBASIC3.19□□□□□ -1.9
Ccdc39Q9D5Y1 Gm23895-201ENSMUST00000158108 160 ntBASIC3.19□□□□□ -1.9
Ccdc39Q9D5Y1 Gm24876-201ENSMUST00000158780 92 ntBASIC3.19□□□□□ -1.9
Ccdc39Q9D5Y1 Vmn1r238-201ENSMUST00000165255 921 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
Ccdc39Q9D5Y1 Fam184a-206ENSMUST00000169866 501 ntTSL 5 BASIC3.19□□□□□ -1.9
Ccdc39Q9D5Y1 Gm20718-201ENSMUST00000176058 259 ntBASIC3.19□□□□□ -1.9
Ccdc39Q9D5Y1 Gm29553-201ENSMUST00000189692 279 ntBASIC3.19□□□□□ -1.9
Ccdc39Q9D5Y1 Gm6012-201ENSMUST00000210821 730 ntBASIC3.19□□□□□ -1.9
Ccdc39Q9D5Y1 Vmn1r79-201ENSMUST00000062811 921 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
Ccdc39Q9D5Y1 Gm42785-201ENSMUST00000202316 3835 ntBASIC3.19□□□□□ -1.9
Ccdc39Q9D5Y1 Olfr1487-203ENSMUST00000209005 2061 ntTSL 3 BASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 Gm37928-201ENSMUST00000193265 4131 ntBASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 Olfr1454-202ENSMUST00000213806 3906 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 Gm25728-201ENSMUST00000104525 159 ntBASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 Mir466n-201ENSMUST00000104798 94 ntBASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 Mir190b-201ENSMUST00000104803 80 ntBASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 Gm13581-201ENSMUST00000120675 278 ntBASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 Slc7a12-203ENSMUST00000120801 1069 ntTSL 5 BASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 Olfr1186-201ENSMUST00000121619 1090 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 Gm24517-201ENSMUST00000122560 107 ntBASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 Gm15218-201ENSMUST00000131006 618 ntTSL 5 BASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 Gm26393-201ENSMUST00000157625 129 ntBASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 Gm24291-201ENSMUST00000157633 162 ntBASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 Gm8338-201ENSMUST00000163928 363 ntBASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 Snord53-201ENSMUST00000175146 78 ntBASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 Gm25470-201ENSMUST00000175576 111 ntBASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 Obox4-ps6-201ENSMUST00000176578 724 ntBASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 1700025F22Rik-204ENSMUST00000181567 578 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 4930553J12Rik-202ENSMUST00000187823 851 ntBASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 Gm29263-201ENSMUST00000188718 463 ntBASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 Gm37946-201ENSMUST00000192064 347 ntBASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 Gm37979-201ENSMUST00000193065 712 ntBASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 Gm42818-201ENSMUST00000198869 987 ntBASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 Gm18635-201ENSMUST00000199020 1060 ntBASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 Gm42578-201ENSMUST00000199960 194 ntBASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 Gm44128-201ENSMUST00000204909 219 ntBASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 Olfr800-202ENSMUST00000217094 3831 ntAPPRIS P1 TSL 3 BASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 AC160966.1-201ENSMUST00000217147 933 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 CT030184.1-201ENSMUST00000222393 416 ntBASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 AC159188.1-201ENSMUST00000225198 526 ntBASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 AC125223.1-203ENSMUST00000225304 498 ntBASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 AC101945.3-201ENSMUST00000226568 153 ntBASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 1700025F22Rik-201ENSMUST00000078770 650 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 Gm5800-201ENSMUST00000095916 903 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 Olfr1048-201ENSMUST00000099900 963 ntAPPRIS P2 BASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 Chst9-201ENSMUST00000053017 1620 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 Olfr1218-203ENSMUST00000215048 3900 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
Ccdc39Q9D5Y1 Olfr251-202ENSMUST00000214865 4930 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
Ccdc39Q9D5Y1 Vmn2r50-201ENSMUST00000074943 2586 ntAPPRIS P2 TSL 5 BASIC3.17□□□□□ -1.9
Ccdc39Q9D5Y1 Gm11228-201ENSMUST00000143796 2013 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
Ccdc39Q9D5Y1 Gm11042-201ENSMUST00000110441 120 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
Ccdc39Q9D5Y1 Mir466k-201ENSMUST00000116774 122 ntBASIC3.17□□□□□ -1.9
Ccdc39Q9D5Y1 Gm13046-201ENSMUST00000117391 501 ntBASIC3.17□□□□□ -1.9
Ccdc39Q9D5Y1 Gm1993-201ENSMUST00000120268 1131 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
Ccdc39Q9D5Y1 Gm14360-201ENSMUST00000120670 393 ntBASIC3.17□□□□□ -1.9
Ccdc39Q9D5Y1 Gm13720-201ENSMUST00000120741 196 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 76,532 protein–RNA pairs in 83.5 ms