Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm9712-201ENSMUST00000210842 311 ntBASIC3.47□□□□□ -1.85
ShhQ62226 Gm45344-201ENSMUST00000211610 341 ntBASIC3.47□□□□□ -1.85
ShhQ62226 AL450317.1-201ENSMUST00000213941 291 ntBASIC3.47□□□□□ -1.85
ShhQ62226 Olfr1266-ps1-201ENSMUST00000214850 180 ntBASIC3.47□□□□□ -1.85
ShhQ62226 AC160016.1-201ENSMUST00000215589 448 ntBASIC3.47□□□□□ -1.85
ShhQ62226 Gm34158-201ENSMUST00000216390 567 ntTSL 5 BASIC3.47□□□□□ -1.85
ShhQ62226 Gm46193-201ENSMUST00000219399 364 ntBASIC3.47□□□□□ -1.85
ShhQ62226 AC138718.1-201ENSMUST00000225947 1009 ntBASIC3.47□□□□□ -1.85
ShhQ62226 Gm23518-201ENSMUST00000082835 153 ntBASIC3.47□□□□□ -1.85
ShhQ62226 2410024N13Rik-201ENSMUST00000090704 669 ntBASIC3.47□□□□□ -1.85
ShhQ62226 Vmn1r178-203ENSMUST00000226489 2644 ntBASIC3.47□□□□□ -1.85
ShhQ62226 AC167250.1-201ENSMUST00000213739 3813 ntBASIC3.47□□□□□ -1.85
ShhQ62226 Olfr816-202ENSMUST00000213438 3306 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
ShhQ62226 Vmn2r-ps36-201ENSMUST00000172589 2562 ntBASIC3.47□□□□□ -1.85
ShhQ62226 Olfr1126-202ENSMUST00000213366 1827 ntAPPRIS P1 TSL 3 BASIC3.47□□□□□ -1.85
ShhQ62226 Gm20939-201ENSMUST00000108007 1572 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.85
ShhQ62226 Csnka2ip-202ENSMUST00000209382 2859 ntAPPRIS ALT2 TSL 5 BASIC3.46□□□□□ -1.85
ShhQ62226 Vmn1r178-204ENSMUST00000226640 2282 ntBASIC3.46□□□□□ -1.85
ShhQ62226 Olfr1130-202ENSMUST00000216580 2648 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.86
ShhQ62226 Gm381-201ENSMUST00000117443 2037 ntBASIC3.46□□□□□ -1.86
ShhQ62226 Olfr548-ps1-202ENSMUST00000210064 4287 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.86
ShhQ62226 Vmn2r90-201ENSMUST00000169805 2592 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.86
ShhQ62226 Chst9-201ENSMUST00000053017 1620 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
ShhQ62226 Gm23747-201ENSMUST00000104228 131 ntBASIC3.46□□□□□ -1.86
ShhQ62226 Gm22023-201ENSMUST00000104354 130 ntBASIC3.46□□□□□ -1.86
ShhQ62226 Gm23609-201ENSMUST00000104542 127 ntBASIC3.46□□□□□ -1.86
ShhQ62226 Gm14657-201ENSMUST00000117461 302 ntBASIC3.46□□□□□ -1.86
ShhQ62226 Nectin3-206ENSMUST00000121803 541 ntTSL 2 BASIC3.46□□□□□ -1.86
ShhQ62226 Gm22107-201ENSMUST00000122548 100 ntBASIC3.46□□□□□ -1.86
ShhQ62226 Gm25621-201ENSMUST00000157223 114 ntBASIC3.46□□□□□ -1.86
ShhQ62226 Vmn1r-ps40-201ENSMUST00000172862 343 ntBASIC3.46□□□□□ -1.86
ShhQ62226 Gm23523-201ENSMUST00000180190 107 ntBASIC3.46□□□□□ -1.86
ShhQ62226 Gm26556-201ENSMUST00000180645 320 ntBASIC3.46□□□□□ -1.86
ShhQ62226 Ptma-ps1-201ENSMUST00000181079 309 ntBASIC3.46□□□□□ -1.86
ShhQ62226 Gm13266-203ENSMUST00000193364 421 ntTSL 3 BASIC3.46□□□□□ -1.86
ShhQ62226 Gm42425-201ENSMUST00000197756 565 ntTSL 5 BASIC3.46□□□□□ -1.86
ShhQ62226 Igkv13-57-1-201ENSMUST00000198063 305 ntBASIC3.46□□□□□ -1.86
ShhQ62226 Gm44355-201ENSMUST00000200417 104 ntBASIC3.46□□□□□ -1.86
ShhQ62226 Olfr436-ps1-201ENSMUST00000203108 284 ntBASIC3.46□□□□□ -1.86
ShhQ62226 Zfp813-ps-202ENSMUST00000204773 618 ntTSL 5 BASIC3.46□□□□□ -1.86
ShhQ62226 Gm45600-201ENSMUST00000210828 234 ntTSL 5 BASIC3.46□□□□□ -1.86
ShhQ62226 Gm31294-201ENSMUST00000211216 138 ntTSL 5 BASIC3.46□□□□□ -1.86
ShhQ62226 AC116460.1-201ENSMUST00000219040 313 ntBASIC3.46□□□□□ -1.86
ShhQ62226 Gm21007-201ENSMUST00000221024 326 ntBASIC3.46□□□□□ -1.86
ShhQ62226 AC126554.1-201ENSMUST00000222161 271 ntBASIC3.46□□□□□ -1.86
ShhQ62226 AC124489.2-201ENSMUST00000223930 589 ntBASIC3.46□□□□□ -1.86
ShhQ62226 CT030254.2-201ENSMUST00000225902 502 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
ShhQ62226 AC101945.3-201ENSMUST00000226568 153 ntBASIC3.46□□□□□ -1.86
ShhQ62226 Olfr394-201ENSMUST00000071478 933 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
ShhQ62226 Zfp458-201ENSMUST00000045969 3488 ntAPPRIS P2 TSL 1 (best) BASIC3.46□□□□□ -1.86
ShhQ62226 Olfr358-202ENSMUST00000216437 4962 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.86
ShhQ62226 Cyp3a41b-201ENSMUST00000075837 2064 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
ShhQ62226 AC115047.2-201ENSMUST00000214421 1848 ntBASIC3.46□□□□□ -1.86
ShhQ62226 Hhla1-201ENSMUST00000100584 2262 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
ShhQ62226 Olfr1274-ps-202ENSMUST00000216111 3395 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.86
ShhQ62226 Rian-201ENSMUST00000180876 8089 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
ShhQ62226 Gm37236-201ENSMUST00000193670 3249 ntBASIC3.46□□□□□ -1.86
ShhQ62226 C030005K15Rik-201ENSMUST00000166373 1882 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
ShhQ62226 Nlrp4c-201ENSMUST00000037728 3615 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
ShhQ62226 Igkv9-129-201ENSMUST00000103308 350 ntAPPRIS ALT2 BASIC3.45□□□□□ -1.86
ShhQ62226 Trav8-1-201ENSMUST00000103643 328 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
ShhQ62226 Gm14537-201ENSMUST00000117464 599 ntBASIC3.45□□□□□ -1.86
ShhQ62226 Gm15381-201ENSMUST00000121501 1156 ntBASIC3.45□□□□□ -1.86
ShhQ62226 Gm8880-201ENSMUST00000121800 454 ntBASIC3.45□□□□□ -1.86
ShhQ62226 Gm12023-201ENSMUST00000145182 520 ntTSL 5 BASIC3.45□□□□□ -1.86
ShhQ62226 Gm26088-201ENSMUST00000157896 131 ntBASIC3.45□□□□□ -1.86
ShhQ62226 Gm22434-201ENSMUST00000158549 122 ntBASIC3.45□□□□□ -1.86
ShhQ62226 Vmn2r-ps55-201ENSMUST00000173834 240 ntBASIC3.45□□□□□ -1.86
ShhQ62226 Gm6625-201ENSMUST00000177870 272 ntBASIC3.45□□□□□ -1.86
ShhQ62226 Gm28399-201ENSMUST00000186221 318 ntBASIC3.45□□□□□ -1.86
ShhQ62226 Gm28572-201ENSMUST00000187444 318 ntBASIC3.45□□□□□ -1.86
ShhQ62226 Olfr289-ps1-201ENSMUST00000192834 369 ntBASIC3.45□□□□□ -1.86
ShhQ62226 Gm42470-201ENSMUST00000198086 251 ntTSL 3 BASIC3.45□□□□□ -1.86
ShhQ62226 Gm43500-201ENSMUST00000201067 312 ntTSL 5 BASIC3.45□□□□□ -1.86
ShhQ62226 Gm15927-204ENSMUST00000206075 372 ntTSL 3 BASIC3.45□□□□□ -1.86
ShhQ62226 4930555G07Rik-202ENSMUST00000219879 750 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
ShhQ62226 AC159203.2-201ENSMUST00000221326 193 ntBASIC3.45□□□□□ -1.86
ShhQ62226 AC129219.3-201ENSMUST00000223790 196 ntBASIC3.45□□□□□ -1.86
ShhQ62226 Ssxa1-201ENSMUST00000072593 433 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
ShhQ62226 Gm23404-201ENSMUST00000082543 97 ntBASIC3.45□□□□□ -1.86
ShhQ62226 Gm23378-201ENSMUST00000082942 107 ntBASIC3.45□□□□□ -1.86
ShhQ62226 Gm25512-201ENSMUST00000083863 107 ntBASIC3.45□□□□□ -1.86
ShhQ62226 Gm23741-201ENSMUST00000097237 171 ntBASIC3.45□□□□□ -1.86
ShhQ62226 Olfr1226-204ENSMUST00000215987 3251 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
ShhQ62226 Olfr1461-202ENSMUST00000207113 3481 ntAPPRIS P1 TSL 2 BASIC3.45□□□□□ -1.86
ShhQ62226 Olfr811-202ENSMUST00000215058 2508 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
ShhQ62226 Krtap24-1-201ENSMUST00000052512 1571 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
ShhQ62226 A230081H15Rik-201ENSMUST00000218326 2929 ntBASIC3.45□□□□□ -1.86
ShhQ62226 Klra2-201ENSMUST00000032306 1799 ntAPPRIS P3 TSL 1 (best) BASIC3.45□□□□□ -1.86
ShhQ62226 Zfp600-204ENSMUST00000168483 4244 ntAPPRIS P1 TSL 2 BASIC3.45□□□□□ -1.86
ShhQ62226 Cp-204ENSMUST00000108328 4504 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
ShhQ62226 C87414-206ENSMUST00000162964 2852 ntAPPRIS P2 TSL 1 (best) BASIC3.45□□□□□ -1.86
ShhQ62226 5730507A11Rik-201ENSMUST00000204297 3371 ntBASIC3.45□□□□□ -1.86
ShhQ62226 Gm38073-201ENSMUST00000195141 3665 ntBASIC3.45□□□□□ -1.86
ShhQ62226 Gm38388-201ENSMUST00000195569 1430 ntBASIC3.44□□□□□ -1.86
ShhQ62226 Gm15084-201ENSMUST00000178585 1502 ntBASIC3.44□□□□□ -1.86
ShhQ62226 Vmn2r50-202ENSMUST00000086298 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC3.44□□□□□ -1.86
ShhQ62226 Olfr784-202ENSMUST00000214064 3119 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
ShhQ62226 Vmn1r74-202ENSMUST00000228471 6608 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
ShhQ62226 Olfr881-202ENSMUST00000212489 4237 ntAPPRIS P1 TSL 3 BASIC3.44□□□□□ -1.86
Retrieved 100 of 76,532 protein–RNA pairs in 153.9 ms