Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Mir3066-201ENSMUST00000175296 83 ntBASIC3.5□□□□□ -1.85
Col28a1Q2UY11 Gm21028-201ENSMUST00000179470 123 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
Col28a1Q2UY11 Gm27385-201ENSMUST00000184747 104 ntBASIC3.5□□□□□ -1.85
Col28a1Q2UY11 Gm28995-201ENSMUST00000186625 261 ntBASIC3.5□□□□□ -1.85
Col28a1Q2UY11 Gm37757-201ENSMUST00000193072 210 ntBASIC3.5□□□□□ -1.85
Col28a1Q2UY11 Gm37459-202ENSMUST00000195007 563 ntTSL 3 BASIC3.5□□□□□ -1.85
Col28a1Q2UY11 Olfr1556-ps1-201ENSMUST00000204688 466 ntBASIC3.5□□□□□ -1.85
Col28a1Q2UY11 Gm45438-201ENSMUST00000210242 564 ntBASIC3.5□□□□□ -1.85
Col28a1Q2UY11 Gm45911-201ENSMUST00000211844 601 ntTSL 3 BASIC3.5□□□□□ -1.85
Col28a1Q2UY11 AC164567.2-201ENSMUST00000219363 445 ntBASIC3.5□□□□□ -1.85
Col28a1Q2UY11 AC159232.1-201ENSMUST00000222297 580 ntTSL 3 BASIC3.5□□□□□ -1.85
Col28a1Q2UY11 AC154368.1-201ENSMUST00000223465 205 ntTSL 5 BASIC3.5□□□□□ -1.85
Col28a1Q2UY11 AC120553.1-201ENSMUST00000227313 260 ntBASIC3.5□□□□□ -1.85
Col28a1Q2UY11 Stfa3-201ENSMUST00000068182 412 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
Col28a1Q2UY11 Snora70-201ENSMUST00000083047 137 ntBASIC3.5□□□□□ -1.85
Col28a1Q2UY11 AC153969.1-201ENSMUST00000214047 2605 ntBASIC3.5□□□□□ -1.85
Col28a1Q2UY11 Slco6d1-202ENSMUST00000160796 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Gm10647-201ENSMUST00000098612 2036 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Strbp-201ENSMUST00000028279 16348 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Olfr1009-203ENSMUST00000216443 4047 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Igkv5-48-201ENSMUST00000103364 360 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Bsph2-201ENSMUST00000108526 532 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Gm15025-201ENSMUST00000118434 418 ntBASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Gm12787-201ENSMUST00000119234 396 ntBASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Rab9b-ps1-201ENSMUST00000119785 606 ntBASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Mup-ps20-201ENSMUST00000121132 389 ntBASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Gm12924-201ENSMUST00000121747 318 ntBASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Gm15167-201ENSMUST00000121997 187 ntBASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Gm22320-201ENSMUST00000157149 312 ntBASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Gm22791-201ENSMUST00000157232 145 ntBASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Gm24729-201ENSMUST00000158225 137 ntBASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Gm22840-201ENSMUST00000158444 136 ntBASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Gm20476-201ENSMUST00000172644 492 ntTSL 2 BASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Gm23191-201ENSMUST00000179147 107 ntBASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Gm29452-201ENSMUST00000187996 313 ntBASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Gm28860-201ENSMUST00000188103 313 ntBASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Gm37455-201ENSMUST00000191993 529 ntBASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Olfr289-ps1-201ENSMUST00000192834 369 ntBASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Gm37104-201ENSMUST00000193278 196 ntBASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Gm42825-201ENSMUST00000198883 723 ntTSL 2 BASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Gm43500-201ENSMUST00000201067 312 ntTSL 5 BASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Gm44011-201ENSMUST00000203336 394 ntBASIC3.49□□□□□ -1.85
Col28a1Q2UY11 4930595L18Rik-201ENSMUST00000204069 506 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Gm9068-201ENSMUST00000217393 455 ntBASIC3.49□□□□□ -1.85
Col28a1Q2UY11 AC158686.2-201ENSMUST00000218599 976 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Gm2446-201ENSMUST00000220144 772 ntBASIC3.49□□□□□ -1.85
Col28a1Q2UY11 CT485612.2-201ENSMUST00000223014 151 ntBASIC3.49□□□□□ -1.85
Col28a1Q2UY11 AC158142.2-201ENSMUST00000227892 635 ntBASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Defb7-201ENSMUST00000047851 306 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Gm22293-201ENSMUST00000083314 109 ntBASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Gm14325-201ENSMUST00000108939 1576 ntAPPRIS P1 TSL 2 BASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Cd180-201ENSMUST00000022124 2650 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Olfr263-202ENSMUST00000215804 3963 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Olfr1094-202ENSMUST00000217509 1693 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Olfr1434-201ENSMUST00000207186 2714 ntAPPRIS P1 TSL 3 BASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Olfr1326-ps1-201ENSMUST00000059880 3637 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
Col28a1Q2UY11 Olfr1454-203ENSMUST00000214695 4049 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Mir466b-8-201ENSMUST00000103883 86 ntBASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Gm25765-201ENSMUST00000104100 132 ntBASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Gm23532-201ENSMUST00000104569 112 ntBASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Lyst-201ENSMUST00000110559 13181 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Gm11577-201ENSMUST00000118030 737 ntBASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Gm14915-201ENSMUST00000120747 204 ntBASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Gm12858-201ENSMUST00000121913 208 ntBASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Gm13868-201ENSMUST00000122411 294 ntBASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Gm15718-201ENSMUST00000131085 311 ntTSL 3 BASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Gm15700-201ENSMUST00000139791 821 ntTSL 3 BASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Gm25606-201ENSMUST00000158363 95 ntBASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Gm23793-201ENSMUST00000179396 117 ntBASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Scgb2b17-202ENSMUST00000182640 420 ntAPPRIS ALT2 TSL 3 BASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Gm28257-201ENSMUST00000185244 463 ntBASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Gm28654-201ENSMUST00000189801 379 ntBASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Gm28314-201ENSMUST00000191276 345 ntBASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Gm32447-201ENSMUST00000194265 697 ntBASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Gm29704-201ENSMUST00000196011 253 ntBASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Mir466e-201ENSMUST00000198862 84 ntBASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Mir466c-1-201ENSMUST00000200654 84 ntBASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Gm19726-201ENSMUST00000205008 240 ntBASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Gm7675-201ENSMUST00000208828 686 ntBASIC3.48□□□□□ -1.85
Col28a1Q2UY11 AC153506.2-201ENSMUST00000218051 257 ntBASIC3.48□□□□□ -1.85
Col28a1Q2UY11 CT030161.1-201ENSMUST00000218411 124 ntBASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Gm8249-201ENSMUST00000219225 465 ntBASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Gm9309-201ENSMUST00000223537 546 ntBASIC3.48□□□□□ -1.85
Col28a1Q2UY11 AC161572.1-201ENSMUST00000227486 640 ntBASIC3.48□□□□□ -1.85
Col28a1Q2UY11 AC115291.2-201ENSMUST00000228335 437 ntBASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Sval1-201ENSMUST00000031898 615 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Olfr746-201ENSMUST00000080616 945 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Gm24147-201ENSMUST00000082763 144 ntBASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Cfh-202ENSMUST00000111976 4365 ntAPPRIS P2 TSL 1 (best) BASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Cfh-201ENSMUST00000066859 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Gm43958-201ENSMUST00000204360 3544 ntBASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Dst-201ENSMUST00000097785 23251 ntAPPRIS P4 TSL 1 (best) BASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Olfr735-202ENSMUST00000216634 3860 ntAPPRIS ALT2 TSL 3 BASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Gm13972-201ENSMUST00000153726 3164 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
Col28a1Q2UY11 AC159193.2-201ENSMUST00000220865 4251 ntBASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Ppef1-201ENSMUST00000071204 2483 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
Col28a1Q2UY11 D930036K23Rik-201ENSMUST00000191894 3964 ntBASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Gm10340-201ENSMUST00000170790 1755 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Vmn2r91-201ENSMUST00000172359 2571 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
Col28a1Q2UY11 Vmn2r-ps47-201ENSMUST00000174515 2557 ntBASIC3.48□□□□□ -1.85
Retrieved 100 of 76,532 protein–RNA pairs in 83.3 ms