Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm10297-201ENSMUST00000207136 651 ntBASIC3.15□□□□□ -1.91
Scn4aQ9ER60 AC125531.1-201ENSMUST00000219849 221 ntBASIC3.15□□□□□ -1.91
Scn4aQ9ER60 Gm2544-201ENSMUST00000222702 756 ntBASIC3.15□□□□□ -1.91
Scn4aQ9ER60 Olfr191-201ENSMUST00000078517 930 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
Scn4aQ9ER60 Gm24611-201ENSMUST00000083272 107 ntBASIC3.15□□□□□ -1.91
Scn4aQ9ER60 Vmn1r228-201ENSMUST00000072410 1443 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
Scn4aQ9ER60 Gm7905-201ENSMUST00000119933 1386 ntBASIC3.15□□□□□ -1.91
Scn4aQ9ER60 Gm6221-201ENSMUST00000180064 1386 ntBASIC3.15□□□□□ -1.91
Scn4aQ9ER60 Gm12022-201ENSMUST00000143311 1340 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
Scn4aQ9ER60 Olfr197-202ENSMUST00000207772 1320 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
Scn4aQ9ER60 Naaladl2-202ENSMUST00000203414 9330 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
Scn4aQ9ER60 Gm25313-201ENSMUST00000101817 116 ntBASIC3.14□□□□□ -1.91
Scn4aQ9ER60 Gm13087-201ENSMUST00000118298 256 ntBASIC3.14□□□□□ -1.91
Scn4aQ9ER60 Gm22208-201ENSMUST00000122658 110 ntBASIC3.14□□□□□ -1.91
Scn4aQ9ER60 4933411O13Rik-202ENSMUST00000140815 370 ntTSL 3 BASIC3.14□□□□□ -1.91
Scn4aQ9ER60 Snord53-201ENSMUST00000175146 78 ntBASIC3.14□□□□□ -1.91
Scn4aQ9ER60 Mir3106-201ENSMUST00000175401 82 ntBASIC3.14□□□□□ -1.91
Scn4aQ9ER60 Gm23287-201ENSMUST00000179427 116 ntBASIC3.14□□□□□ -1.91
Scn4aQ9ER60 Gm23143-201ENSMUST00000180137 116 ntBASIC3.14□□□□□ -1.91
Scn4aQ9ER60 Gm18346-201ENSMUST00000216782 325 ntBASIC3.14□□□□□ -1.91
Scn4aQ9ER60 Gm24871-201ENSMUST00000083099 116 ntBASIC3.14□□□□□ -1.91
Scn4aQ9ER60 Gm23733-201ENSMUST00000083750 106 ntBASIC3.14□□□□□ -1.91
Scn4aQ9ER60 Rnu5g-201ENSMUST00000093721 116 ntBASIC3.14□□□□□ -1.91
Scn4aQ9ER60 Olfr290-202ENSMUST00000214501 5196 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
Scn4aQ9ER60 Olfr290-204ENSMUST00000216367 5182 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
Scn4aQ9ER60 Lrp1b-209ENSMUST00000185258 1874 ntTSL 5 BASIC3.14□□□□□ -1.91
Scn4aQ9ER60 Obscn-203ENSMUST00000052872 23006 ntTSL 5 BASIC3.14□□□□□ -1.91
Scn4aQ9ER60 Gm26082-201ENSMUST00000104070 127 ntBASIC3.14□□□□□ -1.91
Scn4aQ9ER60 Gm2003-201ENSMUST00000118537 636 ntBASIC3.14□□□□□ -1.91
Scn4aQ9ER60 Gm12016-201ENSMUST00000119079 681 ntBASIC3.14□□□□□ -1.91
Scn4aQ9ER60 Gm13687-201ENSMUST00000119857 282 ntBASIC3.14□□□□□ -1.91
Scn4aQ9ER60 Gm1989-201ENSMUST00000126244 636 ntBASIC3.14□□□□□ -1.91
Scn4aQ9ER60 Gm36520-201ENSMUST00000200449 400 ntTSL 3 BASIC3.14□□□□□ -1.91
Scn4aQ9ER60 AC135019.1-201ENSMUST00000219949 307 ntBASIC3.14□□□□□ -1.91
Scn4aQ9ER60 Olfr773-201ENSMUST00000072976 936 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
Scn4aQ9ER60 Gm7648-201ENSMUST00000173036 1658 ntBASIC3.13□□□□□ -1.91
Scn4aQ9ER60 Olfr1228-203ENSMUST00000216392 2145 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
Scn4aQ9ER60 Gm25274-201ENSMUST00000104296 135 ntBASIC3.13□□□□□ -1.91
Scn4aQ9ER60 Gm14008-201ENSMUST00000120483 274 ntBASIC3.13□□□□□ -1.91
Scn4aQ9ER60 Gm22478-201ENSMUST00000122570 154 ntBASIC3.13□□□□□ -1.91
Scn4aQ9ER60 Lce6a-201ENSMUST00000138403 795 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
Scn4aQ9ER60 Gm13595-201ENSMUST00000145994 494 ntTSL 3 BASIC3.13□□□□□ -1.91
Scn4aQ9ER60 Gm25470-201ENSMUST00000175576 111 ntBASIC3.13□□□□□ -1.91
Scn4aQ9ER60 Cldn34c3-201ENSMUST00000178148 702 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
Scn4aQ9ER60 Gm21874-201ENSMUST00000178374 699 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
Scn4aQ9ER60 Esp15-201ENSMUST00000178929 1168 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
Scn4aQ9ER60 Gm28399-201ENSMUST00000186221 318 ntBASIC3.13□□□□□ -1.91
Scn4aQ9ER60 Gm28572-201ENSMUST00000187444 318 ntBASIC3.13□□□□□ -1.91
Scn4aQ9ER60 Gm28552-201ENSMUST00000190725 388 ntBASIC3.13□□□□□ -1.91
Scn4aQ9ER60 AL603834.1-201ENSMUST00000198372 121 ntBASIC3.13□□□□□ -1.91
Scn4aQ9ER60 Igkv13-62-1-201ENSMUST00000198690 317 ntBASIC3.13□□□□□ -1.91
Scn4aQ9ER60 Igkv20-101-2-201ENSMUST00000200406 339 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
Scn4aQ9ER60 Gm44954-201ENSMUST00000208513 227 ntBASIC3.13□□□□□ -1.91
Scn4aQ9ER60 Olfr1285-201ENSMUST00000208523 903 ntBASIC3.13□□□□□ -1.91
Scn4aQ9ER60 Olfr787-201ENSMUST00000077836 939 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
Scn4aQ9ER60 Gm23939-201ENSMUST00000082880 133 ntBASIC3.13□□□□□ -1.91
Scn4aQ9ER60 Olfr1282-201ENSMUST00000099618 918 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
Scn4aQ9ER60 Gm44527-201ENSMUST00000182210 2945 ntTSL 2 BASIC3.13□□□□□ -1.91
Scn4aQ9ER60 AC122850.1-201ENSMUST00000220380 5690 ntBASIC3.13□□□□□ -1.91
Scn4aQ9ER60 Olfr1107-202ENSMUST00000214049 4388 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Gm13228-201ENSMUST00000118937 634 ntBASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Gm14517-201ENSMUST00000119040 337 ntBASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Gm12515-201ENSMUST00000120116 361 ntBASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Gm13431-201ENSMUST00000122948 476 ntTSL 2 BASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Ear-ps12-201ENSMUST00000161720 451 ntBASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Ear-ps3-201ENSMUST00000168308 445 ntBASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Olfr421-ps1-201ENSMUST00000179386 1050 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Gm24968-201ENSMUST00000179817 107 ntBASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Gm28298-201ENSMUST00000185287 622 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Gm28176-201ENSMUST00000185322 622 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Gm29315-201ENSMUST00000185844 622 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Gm29581-201ENSMUST00000186083 622 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Gm29210-201ENSMUST00000186332 622 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Gm28761-201ENSMUST00000186540 622 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Gm28170-201ENSMUST00000186892 622 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Gm28073-201ENSMUST00000187174 622 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Gm28725-201ENSMUST00000187372 622 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Gm29655-201ENSMUST00000187728 622 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Gm28280-201ENSMUST00000188196 622 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Gm28438-201ENSMUST00000188299 345 ntBASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Gm28091-201ENSMUST00000188421 622 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Gm28697-202ENSMUST00000188821 622 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Gm28521-201ENSMUST00000188948 622 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Gm28300-202ENSMUST00000189170 622 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Gm28690-202ENSMUST00000190325 622 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Gm28456-202ENSMUST00000190521 622 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Gm28325-202ENSMUST00000191481 622 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Gm36467-202ENSMUST00000195606 622 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Gm31520-201ENSMUST00000203048 733 ntBASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Gm45912-201ENSMUST00000210646 543 ntBASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Gm45965-201ENSMUST00000221192 1284 ntBASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Gm3333-202ENSMUST00000221763 1044 ntBASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Gm31025-201ENSMUST00000222553 482 ntTSL 5 BASIC3.12□□□□□ -1.91
Scn4aQ9ER60 AC174797.4-201ENSMUST00000225510 347 ntBASIC3.12□□□□□ -1.91
Scn4aQ9ER60 AC107663.3-201ENSMUST00000225873 601 ntBASIC3.12□□□□□ -1.91
Scn4aQ9ER60 mt-Nd3-201ENSMUST00000082411 348 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Vmn1r21-202ENSMUST00000203488 1673 ntAPPRIS P1 TSL 2 BASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Vmn1r82-203ENSMUST00000227672 3651 ntBASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Gm11284-201ENSMUST00000121910 1887 ntBASIC3.12□□□□□ -1.91
Scn4aQ9ER60 Vmn1r76-202ENSMUST00000226300 8189 ntAPPRIS ALT2 BASIC3.12□□□□□ -1.91
Retrieved 100 of 76,532 protein–RNA pairs in 85.6 ms