Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm22073-201ENSMUST00000122668 189 ntBASIC3.57□□□□□ -1.84
Col28a1Q2UY11 Gm6969-201ENSMUST00000140065 342 ntBASIC3.57□□□□□ -1.84
Col28a1Q2UY11 Gm13266-201ENSMUST00000141869 579 ntTSL 2 BASIC3.57□□□□□ -1.84
Col28a1Q2UY11 Gm16212-202ENSMUST00000143555 420 ntTSL 3 BASIC3.57□□□□□ -1.84
Col28a1Q2UY11 Gm26148-201ENSMUST00000157430 68 ntBASIC3.57□□□□□ -1.84
Col28a1Q2UY11 Gm23016-201ENSMUST00000158431 62 ntBASIC3.57□□□□□ -1.84
Col28a1Q2UY11 Gm25902-201ENSMUST00000158493 318 ntBASIC3.57□□□□□ -1.84
Col28a1Q2UY11 Gm22890-201ENSMUST00000158642 144 ntBASIC3.57□□□□□ -1.84
Col28a1Q2UY11 Gm3470-201ENSMUST00000160819 420 ntBASIC3.57□□□□□ -1.84
Col28a1Q2UY11 Rpl30-ps6-201ENSMUST00000163337 348 ntBASIC3.57□□□□□ -1.84
Col28a1Q2UY11 Gm20693-201ENSMUST00000177431 211 ntBASIC3.57□□□□□ -1.84
Col28a1Q2UY11 Gm21775-201ENSMUST00000178669 540 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
Col28a1Q2UY11 Gm23141-201ENSMUST00000178682 94 ntBASIC3.57□□□□□ -1.84
Col28a1Q2UY11 Gm21232-201ENSMUST00000182187 1006 ntBASIC3.57□□□□□ -1.84
Col28a1Q2UY11 Gm10105-201ENSMUST00000184601 270 ntBASIC3.57□□□□□ -1.84
Col28a1Q2UY11 Trav14-2-202ENSMUST00000184874 276 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
Col28a1Q2UY11 Gm34068-201ENSMUST00000193310 632 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
Col28a1Q2UY11 Gm37575-201ENSMUST00000195467 309 ntBASIC3.57□□□□□ -1.84
Col28a1Q2UY11 Gm43723-201ENSMUST00000196886 189 ntBASIC3.57□□□□□ -1.84
Col28a1Q2UY11 Gm12845-201ENSMUST00000203629 1767 ntAPPRIS P5 TSL 5 BASIC3.57□□□□□ -1.84
Col28a1Q2UY11 Gm18423-201ENSMUST00000205144 1074 ntBASIC3.57□□□□□ -1.84
Col28a1Q2UY11 A530021J07Rik-203ENSMUST00000208111 308 ntTSL 2 BASIC3.57□□□□□ -1.84
Col28a1Q2UY11 Gm35857-201ENSMUST00000212739 178 ntBASIC3.57□□□□□ -1.84
Col28a1Q2UY11 Rpl26-ps6-201ENSMUST00000216693 434 ntBASIC3.57□□□□□ -1.84
Col28a1Q2UY11 AC160865.1-201ENSMUST00000219873 151 ntBASIC3.57□□□□□ -1.84
Col28a1Q2UY11 Gm18921-201ENSMUST00000221798 366 ntBASIC3.57□□□□□ -1.84
Col28a1Q2UY11 AC158142.1-201ENSMUST00000226721 416 ntBASIC3.57□□□□□ -1.84
Col28a1Q2UY11 AC134420.1-201ENSMUST00000227027 289 ntBASIC3.57□□□□□ -1.84
Col28a1Q2UY11 AC131029.2-202ENSMUST00000228430 496 ntBASIC3.57□□□□□ -1.84
Col28a1Q2UY11 Gm26439-201ENSMUST00000082592 106 ntBASIC3.57□□□□□ -1.84
Col28a1Q2UY11 Snora7a-201ENSMUST00000082629 140 ntBASIC3.57□□□□□ -1.84
Col28a1Q2UY11 n-R5s220-201ENSMUST00000082926 120 ntBASIC3.57□□□□□ -1.84
Col28a1Q2UY11 Olfr575-201ENSMUST00000084812 957 ntBASIC3.57□□□□□ -1.84
Col28a1Q2UY11 Gm5168-201ENSMUST00000089165 824 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
Col28a1Q2UY11 Olfr1167-201ENSMUST00000099832 1100 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
Col28a1Q2UY11 Cd200r3-209ENSMUST00000166731 3876 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
Col28a1Q2UY11 Cd46-203ENSMUST00000162650 6288 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
Col28a1Q2UY11 Olfr107-203ENSMUST00000215947 3954 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
Col28a1Q2UY11 Olfr986-203ENSMUST00000216720 3381 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
Col28a1Q2UY11 Gm45483-201ENSMUST00000209845 1682 ntBASIC3.56□□□□□ -1.84
Col28a1Q2UY11 Gm40020-201ENSMUST00000215677 1635 ntBASIC3.56□□□□□ -1.84
Col28a1Q2UY11 Arhgap12-205ENSMUST00000182066 4506 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
Col28a1Q2UY11 Gm37887-201ENSMUST00000192752 2716 ntBASIC3.56□□□□□ -1.84
Col28a1Q2UY11 Sacs-203ENSMUST00000119943 14991 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
Col28a1Q2UY11 Gm14890-201ENSMUST00000117660 676 ntBASIC3.56□□□□□ -1.84
Col28a1Q2UY11 Gm11718-201ENSMUST00000119942 537 ntBASIC3.56□□□□□ -1.84
Col28a1Q2UY11 Gm6565-201ENSMUST00000121217 438 ntBASIC3.56□□□□□ -1.84
Col28a1Q2UY11 Spink2-203ENSMUST00000121825 643 ntAPPRIS ALT2 TSL 3 BASIC3.56□□□□□ -1.84
Col28a1Q2UY11 Gm24314-201ENSMUST00000158274 123 ntBASIC3.56□□□□□ -1.84
Col28a1Q2UY11 Gm11983-202ENSMUST00000184940 318 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
Col28a1Q2UY11 Ighv12-1-201ENSMUST00000195542 329 ntBASIC3.56□□□□□ -1.84
Col28a1Q2UY11 Gm43804-201ENSMUST00000198280 456 ntBASIC3.56□□□□□ -1.84
Col28a1Q2UY11 Gm7041-201ENSMUST00000201227 524 ntBASIC3.56□□□□□ -1.84
Col28a1Q2UY11 Gm45173-201ENSMUST00000206819 305 ntBASIC3.56□□□□□ -1.84
Col28a1Q2UY11 Spcs2-202ENSMUST00000207063 727 ntTSL 2 BASIC3.56□□□□□ -1.84
Col28a1Q2UY11 Gm16351-202ENSMUST00000209660 337 ntTSL 5 BASIC3.56□□□□□ -1.84
Col28a1Q2UY11 AL669916.5-201ENSMUST00000214874 361 ntBASIC3.56□□□□□ -1.84
Col28a1Q2UY11 AC113291.1-201ENSMUST00000217557 403 ntTSL 3 BASIC3.56□□□□□ -1.84
Col28a1Q2UY11 Gm22508-201ENSMUST00000082772 110 ntBASIC3.56□□□□□ -1.84
Col28a1Q2UY11 Gm25126-201ENSMUST00000083343 102 ntBASIC3.56□□□□□ -1.84
Col28a1Q2UY11 Smcp-201ENSMUST00000098888 861 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
Col28a1Q2UY11 Olr1-201ENSMUST00000032265 3572 ntAPPRIS P3 TSL 1 (best) BASIC3.56□□□□□ -1.84
Col28a1Q2UY11 Trim30d-202ENSMUST00000071069 3282 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
Col28a1Q2UY11 Olfr1079-203ENSMUST00000216480 2071 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
Col28a1Q2UY11 Olfr1130-201ENSMUST00000213103 2643 ntAPPRIS P1 TSL 3 BASIC3.56□□□□□ -1.84
Col28a1Q2UY11 Gm6176-202ENSMUST00000207633 1581 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
Col28a1Q2UY11 D3Ertd254e-201ENSMUST00000165956 6503 ntTSL 3 BASIC3.55□□□□□ -1.84
Col28a1Q2UY11 Gm38212-201ENSMUST00000194081 2756 ntBASIC3.55□□□□□ -1.84
Col28a1Q2UY11 Gm37655-201ENSMUST00000193968 4123 ntBASIC3.55□□□□□ -1.84
Col28a1Q2UY11 Olfr1231-202ENSMUST00000216144 3961 ntAPPRIS P1 TSL 3 BASIC3.55□□□□□ -1.84
Col28a1Q2UY11 2410141K09Rik-202ENSMUST00000172579 2587 ntAPPRIS P1 TSL 3 BASIC3.55□□□□□ -1.84
Col28a1Q2UY11 Hmgb1-ps5-201ENSMUST00000121058 557 ntBASIC3.55□□□□□ -1.84
Col28a1Q2UY11 Gm14972-201ENSMUST00000121780 364 ntBASIC3.55□□□□□ -1.84
Col28a1Q2UY11 Defb44-ps-201ENSMUST00000126871 219 ntBASIC3.55□□□□□ -1.84
Col28a1Q2UY11 Gm22889-201ENSMUST00000158639 58 ntBASIC3.55□□□□□ -1.84
Col28a1Q2UY11 Vmn1r126-201ENSMUST00000168398 966 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
Col28a1Q2UY11 Vmn1r-ps65-201ENSMUST00000174235 951 ntBASIC3.55□□□□□ -1.84
Col28a1Q2UY11 Gm10067-201ENSMUST00000179462 348 ntBASIC3.55□□□□□ -1.84
Col28a1Q2UY11 Gm22621-201ENSMUST00000179678 74 ntBASIC3.55□□□□□ -1.84
Col28a1Q2UY11 Gm8816-201ENSMUST00000182280 1163 ntBASIC3.55□□□□□ -1.84
Col28a1Q2UY11 Obox4-ps39-201ENSMUST00000184306 628 ntBASIC3.55□□□□□ -1.84
Col28a1Q2UY11 Gm28283-201ENSMUST00000185509 178 ntBASIC3.55□□□□□ -1.84
Col28a1Q2UY11 Rpl23a-ps8-201ENSMUST00000186144 463 ntBASIC3.55□□□□□ -1.84
Col28a1Q2UY11 Gm28951-201ENSMUST00000190742 313 ntBASIC3.55□□□□□ -1.84
Col28a1Q2UY11 Gm38167-201ENSMUST00000195704 1178 ntBASIC3.55□□□□□ -1.84
Col28a1Q2UY11 Gm43043-201ENSMUST00000196579 412 ntBASIC3.55□□□□□ -1.84
Col28a1Q2UY11 1700126H18Rik-201ENSMUST00000201903 405 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
Col28a1Q2UY11 Gm44294-201ENSMUST00000205090 728 ntBASIC3.55□□□□□ -1.84
Col28a1Q2UY11 4930402F11Rik-203ENSMUST00000208289 606 ntTSL 3 BASIC3.55□□□□□ -1.84
Col28a1Q2UY11 Gm45459-201ENSMUST00000209882 442 ntTSL 5 BASIC3.55□□□□□ -1.84
Col28a1Q2UY11 Gm45533-201ENSMUST00000210295 165 ntTSL 5 BASIC3.55□□□□□ -1.84
Col28a1Q2UY11 Gm35371-201ENSMUST00000216204 579 ntTSL 5 BASIC3.55□□□□□ -1.84
Col28a1Q2UY11 Gm31849-201ENSMUST00000220306 375 ntBASIC3.55□□□□□ -1.84
Col28a1Q2UY11 CT030187.1-201ENSMUST00000220605 252 ntBASIC3.55□□□□□ -1.84
Col28a1Q2UY11 1700015C15Rik-201ENSMUST00000221465 374 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
Col28a1Q2UY11 Gm20102-201ENSMUST00000222445 220 ntBASIC3.55□□□□□ -1.84
Col28a1Q2UY11 AC134577.1-201ENSMUST00000227572 295 ntBASIC3.55□□□□□ -1.84
Col28a1Q2UY11 AC121898.1-201ENSMUST00000227599 288 ntBASIC3.55□□□□□ -1.84
Col28a1Q2UY11 Olfr474-201ENSMUST00000054434 933 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
Col28a1Q2UY11 Gm10666-201ENSMUST00000098722 966 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
Retrieved 100 of 76,532 protein–RNA pairs in 85.7 ms