Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm14845-201ENSMUST00000121259 306 ntBASIC5.4□□□□□ -1.54
Rnf40Q3U319 Gm23782-201ENSMUST00000157939 120 ntBASIC5.4□□□□□ -1.54
Rnf40Q3U319 Gm22611-201ENSMUST00000158288 150 ntBASIC5.4□□□□□ -1.54
Rnf40Q3U319 Gm29574-201ENSMUST00000186226 696 ntBASIC5.4□□□□□ -1.54
Rnf40Q3U319 Gm18956-201ENSMUST00000192857 480 ntBASIC5.4□□□□□ -1.54
Rnf40Q3U319 Gm32950-201ENSMUST00000193336 232 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
Rnf40Q3U319 Gm37417-201ENSMUST00000195257 454 ntBASIC5.4□□□□□ -1.54
Rnf40Q3U319 Gm35702-201ENSMUST00000198653 511 ntBASIC5.4□□□□□ -1.54
Rnf40Q3U319 Gm43220-201ENSMUST00000199299 282 ntBASIC5.4□□□□□ -1.54
Rnf40Q3U319 Trav7d-2-201ENSMUST00000200127 337 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
Rnf40Q3U319 Spata19-202ENSMUST00000214158 627 ntTSL 5 BASIC5.4□□□□□ -1.54
Rnf40Q3U319 CT025579.3-201ENSMUST00000224543 451 ntBASIC5.4□□□□□ -1.54
Rnf40Q3U319 Gm10360-201ENSMUST00000097219 272 ntBASIC5.4□□□□□ -1.54
Rnf40Q3U319 Gm5596-201ENSMUST00000207988 2421 ntBASIC5.4□□□□□ -1.55
Rnf40Q3U319 Oxr1-202ENSMUST00000090095 4156 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
Rnf40Q3U319 C130079G13Rik-201ENSMUST00000049476 2789 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
Rnf40Q3U319 Olfr615-202ENSMUST00000214345 3403 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.55
Rnf40Q3U319 Gm6162-201ENSMUST00000194870 2930 ntBASIC5.4□□□□□ -1.55
Rnf40Q3U319 Cfap54-207ENSMUST00000168110 9903 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.55
Rnf40Q3U319 Lair1-201ENSMUST00000068865 6828 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
Rnf40Q3U319 Slfn8-203ENSMUST00000108152 3083 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
Rnf40Q3U319 Gm43230-201ENSMUST00000200980 2129 ntBASIC5.39□□□□□ -1.55
Rnf40Q3U319 Olfr123-202ENSMUST00000214770 2883 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
Rnf40Q3U319 Zfp273-201ENSMUST00000012725 2277 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
Rnf40Q3U319 Dmxl2-202ENSMUST00000118600 9465 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
Rnf40Q3U319 Gm1968-201ENSMUST00000100016 348 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
Rnf40Q3U319 Gm24116-201ENSMUST00000103975 107 ntBASIC5.39□□□□□ -1.55
Rnf40Q3U319 Gm25795-201ENSMUST00000104421 132 ntBASIC5.39□□□□□ -1.55
Rnf40Q3U319 C87499-202ENSMUST00000107142 672 ntAPPRIS ALT2 TSL 2 BASIC5.39□□□□□ -1.55
Rnf40Q3U319 Gm13172-201ENSMUST00000118685 256 ntBASIC5.39□□□□□ -1.55
Rnf40Q3U319 Gm22958-201ENSMUST00000122512 184 ntBASIC5.39□□□□□ -1.55
Rnf40Q3U319 Gm16085-201ENSMUST00000144575 453 ntTSL 3 BASIC5.39□□□□□ -1.55
Rnf40Q3U319 Gm25393-201ENSMUST00000157336 285 ntBASIC5.39□□□□□ -1.55
Rnf40Q3U319 Gm22213-201ENSMUST00000157564 119 ntBASIC5.39□□□□□ -1.55
Rnf40Q3U319 Gm24944-201ENSMUST00000158330 128 ntBASIC5.39□□□□□ -1.55
Rnf40Q3U319 Gm24054-201ENSMUST00000158619 105 ntBASIC5.39□□□□□ -1.55
Rnf40Q3U319 Gm24885-201ENSMUST00000158783 270 ntBASIC5.39□□□□□ -1.55
Rnf40Q3U319 Mir3058-201ENSMUST00000175126 91 ntBASIC5.39□□□□□ -1.55
Rnf40Q3U319 Sbp-203ENSMUST00000182519 368 ntTSL 2 BASIC5.39□□□□□ -1.55
Rnf40Q3U319 Gm37430-201ENSMUST00000193039 196 ntBASIC5.39□□□□□ -1.55
Rnf40Q3U319 Gm40604-202ENSMUST00000219541 522 ntTSL 5 BASIC5.39□□□□□ -1.55
Rnf40Q3U319 Olfr847-202ENSMUST00000216839 2385 ntAPPRIS P1 TSL 3 BASIC5.39□□□□□ -1.55
Rnf40Q3U319 Zfp780b-204ENSMUST00000206685 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
Rnf40Q3U319 Vmn1r217-203ENSMUST00000228656 9767 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
Rnf40Q3U319 4932411K12Rik-203ENSMUST00000210384 1351 ntTSL 5 BASIC5.39□□□□□ -1.55
Rnf40Q3U319 Usp26-201ENSMUST00000069509 4120 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
Rnf40Q3U319 CT009696.3-201ENSMUST00000215342 2184 ntTSL 3 BASIC5.39□□□□□ -1.55
Rnf40Q3U319 Gm43508-201ENSMUST00000197251 3783 ntBASIC5.39□□□□□ -1.55
Rnf40Q3U319 Polk-205ENSMUST00000221899 2319 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
Rnf40Q3U319 Btbd35f7-201ENSMUST00000105007 1960 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
Rnf40Q3U319 Iqch-204ENSMUST00000163982 3375 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
Rnf40Q3U319 Gm43312-201ENSMUST00000201655 2466 ntBASIC5.38□□□□□ -1.55
Rnf40Q3U319 Pgap1-201ENSMUST00000097739 10583 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
Rnf40Q3U319 Mir669b-201ENSMUST00000102172 97 ntBASIC5.38□□□□□ -1.55
Rnf40Q3U319 Gm14086-201ENSMUST00000117152 173 ntBASIC5.38□□□□□ -1.55
Rnf40Q3U319 Gm15183-201ENSMUST00000118933 348 ntBASIC5.38□□□□□ -1.55
Rnf40Q3U319 Gm22867-201ENSMUST00000157499 109 ntBASIC5.38□□□□□ -1.55
Rnf40Q3U319 Gm26346-201ENSMUST00000157525 329 ntBASIC5.38□□□□□ -1.55
Rnf40Q3U319 Gm23644-201ENSMUST00000157856 77 ntBASIC5.38□□□□□ -1.55
Rnf40Q3U319 Scgb2b33-201ENSMUST00000187413 334 ntBASIC5.38□□□□□ -1.55
Rnf40Q3U319 Gm10048-201ENSMUST00000194196 372 ntBASIC5.38□□□□□ -1.55
Rnf40Q3U319 Igkv14-118-2-201ENSMUST00000198287 339 ntBASIC5.38□□□□□ -1.55
Rnf40Q3U319 Gm5750-201ENSMUST00000218711 801 ntBASIC5.38□□□□□ -1.55
Rnf40Q3U319 9430078K24Rik-202ENSMUST00000219857 348 ntTSL 3 BASIC5.38□□□□□ -1.55
Rnf40Q3U319 Gm25411-201ENSMUST00000083760 151 ntBASIC5.38□□□□□ -1.55
Rnf40Q3U319 Gm24449-201ENSMUST00000083985 106 ntBASIC5.38□□□□□ -1.55
Rnf40Q3U319 Uhmk1-203ENSMUST00000150821 7676 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
Rnf40Q3U319 Gm43913-201ENSMUST00000203924 3029 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
Rnf40Q3U319 Gcc2-208ENSMUST00000162860 6400 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
Rnf40Q3U319 Gm5570-202ENSMUST00000101355 2527 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
Rnf40Q3U319 Vmn2r83-201ENSMUST00000167976 2610 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
Rnf40Q3U319 Scn9a-207ENSMUST00000169900 7497 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
Rnf40Q3U319 Gm10471-201ENSMUST00000094946 2967 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
Rnf40Q3U319 Abi3bp-202ENSMUST00000096012 4387 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
Rnf40Q3U319 Nptn-205ENSMUST00000176250 4531 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
Rnf40Q3U319 Gm28168-201ENSMUST00000191265 2630 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
Rnf40Q3U319 Olfr1377-203ENSMUST00000216101 1990 ntAPPRIS P1 TSL 3 BASIC5.37□□□□□ -1.55
Rnf40Q3U319 Gm37814-201ENSMUST00000195820 3644 ntBASIC5.37□□□□□ -1.55
Rnf40Q3U319 Huwe1-202ENSMUST00000112622 14168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
Rnf40Q3U319 Gm12010-201ENSMUST00000122400 2017 ntBASIC5.37□□□□□ -1.55
Rnf40Q3U319 Ighv3-3-201ENSMUST00000103476 296 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
Rnf40Q3U319 Gm12336-201ENSMUST00000125962 322 ntTSL 3 BASIC5.37□□□□□ -1.55
Rnf40Q3U319 Gm16220-201ENSMUST00000131874 405 ntTSL 3 BASIC5.37□□□□□ -1.55
Rnf40Q3U319 Gm2389-201ENSMUST00000160487 189 ntBASIC5.37□□□□□ -1.55
Rnf40Q3U319 Gm16318-201ENSMUST00000162402 601 ntBASIC5.37□□□□□ -1.55
Rnf40Q3U319 H2al2c-201ENSMUST00000163651 336 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
Rnf40Q3U319 Gm17669-201ENSMUST00000163749 465 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
Rnf40Q3U319 H2al2b-201ENSMUST00000168551 336 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
Rnf40Q3U319 Gm24799-201ENSMUST00000178431 79 ntBASIC5.37□□□□□ -1.55
Rnf40Q3U319 Gm22367-201ENSMUST00000178930 132 ntBASIC5.37□□□□□ -1.55
Rnf40Q3U319 Gm20069-201ENSMUST00000178938 545 ntTSL 2 BASIC5.37□□□□□ -1.55
Rnf40Q3U319 Gm21980-201ENSMUST00000180032 143 ntTSL 5 BASIC5.37□□□□□ -1.55
Rnf40Q3U319 Gm27030-201ENSMUST00000182551 464 ntBASIC5.37□□□□□ -1.55
Rnf40Q3U319 Gm3351-201ENSMUST00000193454 505 ntBASIC5.37□□□□□ -1.55
Rnf40Q3U319 Gm42647-201ENSMUST00000195939 459 ntBASIC5.37□□□□□ -1.55
Rnf40Q3U319 Gm44338-201ENSMUST00000198614 110 ntBASIC5.37□□□□□ -1.55
Rnf40Q3U319 Gm44320-201ENSMUST00000199276 86 ntBASIC5.37□□□□□ -1.55
Rnf40Q3U319 Gm2040-201ENSMUST00000202979 289 ntBASIC5.37□□□□□ -1.55
Rnf40Q3U319 Gm45860-201ENSMUST00000212700 334 ntBASIC5.37□□□□□ -1.55
Rnf40Q3U319 Defb14-201ENSMUST00000052601 204 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
Retrieved 100 of 76,532 protein–RNA pairs in 92.1 ms