Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
Vps28Q9D1C8 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Vps28Q9D1C8 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Vps28Q9D1C8 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
Vps28Q9D1C8 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Vps28Q9D1C8 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Vps28Q9D1C8 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Vps28Q9D1C8 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Vps28Q9D1C8 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
Vps28Q9D1C8 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Vps28Q9D1C8 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Vps28Q9D1C8 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Vps28Q9D1C8 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Vps28Q9D1C8 Gm15635-204ENSMUST00000208024 2539 ntBASIC17.64■□□□□ 0.41
Vps28Q9D1C8 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Vps28Q9D1C8 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Vps28Q9D1C8 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Vps28Q9D1C8 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
Vps28Q9D1C8 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC17.63■□□□□ 0.41
Vps28Q9D1C8 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Vps28Q9D1C8 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Vps28Q9D1C8 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Vps28Q9D1C8 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Vps28Q9D1C8 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Vps28Q9D1C8 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Vps28Q9D1C8 Gm13559-201ENSMUST00000120476 863 ntBASIC17.63■□□□□ 0.41
Vps28Q9D1C8 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Vps28Q9D1C8 Mir8112-201ENSMUST00000184382 131 ntBASIC17.63■□□□□ 0.41
Vps28Q9D1C8 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Vps28Q9D1C8 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Vps28Q9D1C8 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Vps28Q9D1C8 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC17.63■□□□□ 0.41
Vps28Q9D1C8 AC158538.1-201ENSMUST00000225870 294 ntBASIC17.63■□□□□ 0.41
Vps28Q9D1C8 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Vps28Q9D1C8 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Vps28Q9D1C8 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC17.63■□□□□ 0.41
Vps28Q9D1C8 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
Vps28Q9D1C8 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Vps28Q9D1C8 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Vps28Q9D1C8 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
Vps28Q9D1C8 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
Vps28Q9D1C8 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Vps28Q9D1C8 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Vps28Q9D1C8 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC17.62■□□□□ 0.41
Vps28Q9D1C8 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Vps28Q9D1C8 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Vps28Q9D1C8 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Vps28Q9D1C8 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Vps28Q9D1C8 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC17.62■□□□□ 0.41
Vps28Q9D1C8 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Vps28Q9D1C8 Gm6433-201ENSMUST00000118634 875 ntBASIC17.62■□□□□ 0.41
Vps28Q9D1C8 Gm13836-201ENSMUST00000121159 501 ntBASIC17.62■□□□□ 0.41
Vps28Q9D1C8 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Vps28Q9D1C8 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Vps28Q9D1C8 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Vps28Q9D1C8 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC17.62■□□□□ 0.41
Vps28Q9D1C8 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Vps28Q9D1C8 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Vps28Q9D1C8 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Vps28Q9D1C8 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Vps28Q9D1C8 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Vps28Q9D1C8 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Vps28Q9D1C8 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Vps28Q9D1C8 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Vps28Q9D1C8 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC17.61■□□□□ 0.41
Vps28Q9D1C8 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC17.61■□□□□ 0.41
Vps28Q9D1C8 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Vps28Q9D1C8 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Vps28Q9D1C8 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Vps28Q9D1C8 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Vps28Q9D1C8 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
Vps28Q9D1C8 Gm9987-201ENSMUST00000069768 567 ntBASIC17.61■□□□□ 0.41
Vps28Q9D1C8 Ddx41-204ENSMUST00000224765 2199 ntBASIC17.61■□□□□ 0.41
Vps28Q9D1C8 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Vps28Q9D1C8 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Vps28Q9D1C8 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Vps28Q9D1C8 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Vps28Q9D1C8 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Vps28Q9D1C8 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Vps28Q9D1C8 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Vps28Q9D1C8 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Vps28Q9D1C8 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Vps28Q9D1C8 Gm43272-201ENSMUST00000200599 1584 ntBASIC17.61■□□□□ 0.41
Vps28Q9D1C8 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Vps28Q9D1C8 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Vps28Q9D1C8 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
Vps28Q9D1C8 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vps28Q9D1C8 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vps28Q9D1C8 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Vps28Q9D1C8 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Vps28Q9D1C8 Gm7638-201ENSMUST00000121348 967 ntBASIC17.6■□□□□ 0.41
Vps28Q9D1C8 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC17.6■□□□□ 0.41
Vps28Q9D1C8 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Vps28Q9D1C8 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vps28Q9D1C8 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vps28Q9D1C8 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vps28Q9D1C8 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Vps28Q9D1C8 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Vps28Q9D1C8 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vps28Q9D1C8 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 45.9 ms