Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC19.23■□□□□ 0.67
Smc1aQ9CU62 Mtag2-201ENSMUST00000058665 714 ntBASIC19.23■□□□□ 0.67
Smc1aQ9CU62 Zfp783-201ENSMUST00000095946 670 ntBASIC19.23■□□□□ 0.67
Smc1aQ9CU62 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Smc1aQ9CU62 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Smc1aQ9CU62 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Smc1aQ9CU62 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Smc1aQ9CU62 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Smc1aQ9CU62 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Smc1aQ9CU62 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Smc1aQ9CU62 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC19.22■□□□□ 0.67
Smc1aQ9CU62 Gm6433-201ENSMUST00000118634 875 ntBASIC19.22■□□□□ 0.67
Smc1aQ9CU62 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Smc1aQ9CU62 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC19.22■□□□□ 0.67
Smc1aQ9CU62 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Smc1aQ9CU62 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Smc1aQ9CU62 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC19.22■□□□□ 0.67
Smc1aQ9CU62 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Smc1aQ9CU62 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Smc1aQ9CU62 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Smc1aQ9CU62 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Smc1aQ9CU62 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Smc1aQ9CU62 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Smc1aQ9CU62 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Smc1aQ9CU62 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Smc1aQ9CU62 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Smc1aQ9CU62 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Smc1aQ9CU62 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
Smc1aQ9CU62 Gm43799-201ENSMUST00000201845 579 ntBASIC19.21■□□□□ 0.67
Smc1aQ9CU62 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Smc1aQ9CU62 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Smc1aQ9CU62 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC19.21■□□□□ 0.67
Smc1aQ9CU62 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Smc1aQ9CU62 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
Smc1aQ9CU62 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Smc1aQ9CU62 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Smc1aQ9CU62 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Smc1aQ9CU62 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Smc1aQ9CU62 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Smc1aQ9CU62 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC19.2■□□□□ 0.66
Smc1aQ9CU62 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Smc1aQ9CU62 Gm8309-201ENSMUST00000206627 1448 ntBASIC19.2■□□□□ 0.66
Smc1aQ9CU62 Gm8969-201ENSMUST00000199694 526 ntBASIC19.2■□□□□ 0.66
Smc1aQ9CU62 Gm10138-203ENSMUST00000206952 366 ntBASIC19.2■□□□□ 0.66
Smc1aQ9CU62 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Smc1aQ9CU62 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Smc1aQ9CU62 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Smc1aQ9CU62 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Smc1aQ9CU62 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Smc1aQ9CU62 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Smc1aQ9CU62 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Smc1aQ9CU62 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC19.19■□□□□ 0.66
Smc1aQ9CU62 Gm43183-201ENSMUST00000200632 547 ntBASIC19.19■□□□□ 0.66
Smc1aQ9CU62 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC19.19■□□□□ 0.66
Smc1aQ9CU62 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Smc1aQ9CU62 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Smc1aQ9CU62 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Smc1aQ9CU62 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Smc1aQ9CU62 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Smc1aQ9CU62 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Smc1aQ9CU62 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Smc1aQ9CU62 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Smc1aQ9CU62 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Smc1aQ9CU62 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Smc1aQ9CU62 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Smc1aQ9CU62 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Smc1aQ9CU62 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Smc1aQ9CU62 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Smc1aQ9CU62 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Smc1aQ9CU62 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC19.18■□□□□ 0.66
Smc1aQ9CU62 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Smc1aQ9CU62 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC19.18■□□□□ 0.66
Smc1aQ9CU62 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Smc1aQ9CU62 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Smc1aQ9CU62 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Smc1aQ9CU62 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Smc1aQ9CU62 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Smc1aQ9CU62 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Smc1aQ9CU62 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Smc1aQ9CU62 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Smc1aQ9CU62 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Smc1aQ9CU62 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Smc1aQ9CU62 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Smc1aQ9CU62 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Smc1aQ9CU62 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Smc1aQ9CU62 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smc1aQ9CU62 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smc1aQ9CU62 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smc1aQ9CU62 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Smc1aQ9CU62 Gm28265-201ENSMUST00000188201 2319 ntBASIC19.17■□□□□ 0.66
Smc1aQ9CU62 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Smc1aQ9CU62 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Smc1aQ9CU62 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
Smc1aQ9CU62 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smc1aQ9CU62 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Smc1aQ9CU62 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC19.17■□□□□ 0.66
Smc1aQ9CU62 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smc1aQ9CU62 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smc1aQ9CU62 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smc1aQ9CU62 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 46.5 ms