Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Ushbp1Q8R370 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ushbp1Q8R370 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ushbp1Q8R370 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ushbp1Q8R370 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ushbp1Q8R370 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ushbp1Q8R370 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Ushbp1Q8R370 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ushbp1Q8R370 Gm10459-201ENSMUST00000202708 1155 ntBASIC19.29■□□□□ 0.68
Ushbp1Q8R370 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC19.29■□□□□ 0.68
Ushbp1Q8R370 Gm43338-201ENSMUST00000198617 2223 ntBASIC19.29■□□□□ 0.68
Ushbp1Q8R370 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC19.29■□□□□ 0.68
Ushbp1Q8R370 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Ushbp1Q8R370 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ushbp1Q8R370 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ushbp1Q8R370 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ushbp1Q8R370 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC19.28■□□□□ 0.68
Ushbp1Q8R370 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
Ushbp1Q8R370 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ushbp1Q8R370 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ushbp1Q8R370 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ushbp1Q8R370 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC19.28■□□□□ 0.68
Ushbp1Q8R370 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Ushbp1Q8R370 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Ushbp1Q8R370 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ushbp1Q8R370 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ushbp1Q8R370 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ushbp1Q8R370 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC19.28■□□□□ 0.68
Ushbp1Q8R370 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ushbp1Q8R370 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Ushbp1Q8R370 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Ushbp1Q8R370 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
Ushbp1Q8R370 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Ushbp1Q8R370 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC19.28■□□□□ 0.68
Ushbp1Q8R370 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ushbp1Q8R370 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ushbp1Q8R370 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ushbp1Q8R370 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Ushbp1Q8R370 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ushbp1Q8R370 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Ushbp1Q8R370 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC19.27■□□□□ 0.68
Ushbp1Q8R370 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC19.27■□□□□ 0.68
Ushbp1Q8R370 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ushbp1Q8R370 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ushbp1Q8R370 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
Ushbp1Q8R370 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Ushbp1Q8R370 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Ushbp1Q8R370 Gm7889-201ENSMUST00000185591 958 ntBASIC19.27■□□□□ 0.68
Ushbp1Q8R370 Gm37292-201ENSMUST00000192062 758 ntBASIC19.27■□□□□ 0.68
Ushbp1Q8R370 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC19.27■□□□□ 0.68
Ushbp1Q8R370 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Ushbp1Q8R370 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Ushbp1Q8R370 Gm43294-201ENSMUST00000202850 2490 ntBASIC19.27■□□□□ 0.67
Ushbp1Q8R370 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Ushbp1Q8R370 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Ushbp1Q8R370 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Ushbp1Q8R370 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Ushbp1Q8R370 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ushbp1Q8R370 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
Ushbp1Q8R370 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ushbp1Q8R370 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ushbp1Q8R370 Gm6659-201ENSMUST00000174752 547 ntBASIC19.26■□□□□ 0.67
Ushbp1Q8R370 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Ushbp1Q8R370 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Ushbp1Q8R370 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ushbp1Q8R370 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Ushbp1Q8R370 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
Ushbp1Q8R370 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ushbp1Q8R370 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ushbp1Q8R370 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ushbp1Q8R370 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ushbp1Q8R370 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ushbp1Q8R370 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ushbp1Q8R370 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ushbp1Q8R370 Gm19721-201ENSMUST00000195284 1764 ntBASIC19.25■□□□□ 0.67
Ushbp1Q8R370 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ushbp1Q8R370 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ushbp1Q8R370 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC19.25■□□□□ 0.67
Ushbp1Q8R370 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ushbp1Q8R370 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC19.25■□□□□ 0.67
Ushbp1Q8R370 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ushbp1Q8R370 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Ushbp1Q8R370 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ushbp1Q8R370 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ushbp1Q8R370 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Ushbp1Q8R370 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC19.25■□□□□ 0.67
Ushbp1Q8R370 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ushbp1Q8R370 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ushbp1Q8R370 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ushbp1Q8R370 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ushbp1Q8R370 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ushbp1Q8R370 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ushbp1Q8R370 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ushbp1Q8R370 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ushbp1Q8R370 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ushbp1Q8R370 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ushbp1Q8R370 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ushbp1Q8R370 Otx2os1-204ENSMUST00000227221 751 ntBASIC19.24■□□□□ 0.67
Ushbp1Q8R370 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ushbp1Q8R370 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms