Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ccdc28aQ8CEI3 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ccdc28aQ8CEI3 Gm11841-201ENSMUST00000117060 1963 ntBASIC18.17■□□□□ 0.5
Ccdc28aQ8CEI3 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ccdc28aQ8CEI3 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ccdc28aQ8CEI3 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ccdc28aQ8CEI3 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ccdc28aQ8CEI3 Gm11927-201ENSMUST00000118472 759 ntBASIC18.17■□□□□ 0.5
Ccdc28aQ8CEI3 Gm26524-201ENSMUST00000192339 390 ntBASIC18.17■□□□□ 0.5
Ccdc28aQ8CEI3 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Ccdc28aQ8CEI3 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ccdc28aQ8CEI3 Gm45412-201ENSMUST00000210217 2275 ntBASIC18.17■□□□□ 0.5
Ccdc28aQ8CEI3 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ccdc28aQ8CEI3 Gm28265-201ENSMUST00000188201 2319 ntBASIC18.17■□□□□ 0.5
Ccdc28aQ8CEI3 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ccdc28aQ8CEI3 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ccdc28aQ8CEI3 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Ccdc28aQ8CEI3 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ccdc28aQ8CEI3 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
Ccdc28aQ8CEI3 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC18.17■□□□□ 0.5
Ccdc28aQ8CEI3 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ccdc28aQ8CEI3 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Ccdc28aQ8CEI3 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc28aQ8CEI3 Gm11643-201ENSMUST00000119578 864 ntBASIC18.16■□□□□ 0.5
Ccdc28aQ8CEI3 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc28aQ8CEI3 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc28aQ8CEI3 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Ccdc28aQ8CEI3 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Ccdc28aQ8CEI3 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc28aQ8CEI3 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc28aQ8CEI3 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Ccdc28aQ8CEI3 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc28aQ8CEI3 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc28aQ8CEI3 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc28aQ8CEI3 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc28aQ8CEI3 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC18.16■□□□□ 0.5
Ccdc28aQ8CEI3 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC18.16■□□□□ 0.5
Ccdc28aQ8CEI3 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Ccdc28aQ8CEI3 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Ccdc28aQ8CEI3 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc28aQ8CEI3 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc28aQ8CEI3 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc28aQ8CEI3 Gm19721-201ENSMUST00000195284 1764 ntBASIC18.15■□□□□ 0.5
Ccdc28aQ8CEI3 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc28aQ8CEI3 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc28aQ8CEI3 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc28aQ8CEI3 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc28aQ8CEI3 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc28aQ8CEI3 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc28aQ8CEI3 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Ccdc28aQ8CEI3 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc28aQ8CEI3 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc28aQ8CEI3 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Ccdc28aQ8CEI3 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Ccdc28aQ8CEI3 Gm11620-201ENSMUST00000118770 1845 ntBASIC18.14■□□□□ 0.5
Ccdc28aQ8CEI3 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc28aQ8CEI3 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc28aQ8CEI3 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc28aQ8CEI3 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc28aQ8CEI3 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
Ccdc28aQ8CEI3 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc28aQ8CEI3 Gm10849-201ENSMUST00000100397 618 ntBASIC18.14■□□□□ 0.49
Ccdc28aQ8CEI3 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC18.14■□□□□ 0.49
Ccdc28aQ8CEI3 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
Ccdc28aQ8CEI3 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc28aQ8CEI3 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC18.14■□□□□ 0.49
Ccdc28aQ8CEI3 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Ccdc28aQ8CEI3 Rab3c-203ENSMUST00000224180 967 ntBASIC18.14■□□□□ 0.49
Ccdc28aQ8CEI3 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc28aQ8CEI3 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc28aQ8CEI3 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc28aQ8CEI3 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC18.14■□□□□ 0.49
Ccdc28aQ8CEI3 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Ccdc28aQ8CEI3 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc28aQ8CEI3 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc28aQ8CEI3 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc28aQ8CEI3 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Ccdc28aQ8CEI3 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc28aQ8CEI3 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc28aQ8CEI3 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc28aQ8CEI3 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc28aQ8CEI3 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc28aQ8CEI3 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Ccdc28aQ8CEI3 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc28aQ8CEI3 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Ccdc28aQ8CEI3 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc28aQ8CEI3 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc28aQ8CEI3 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Ccdc28aQ8CEI3 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc28aQ8CEI3 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc28aQ8CEI3 Gm15847-201ENSMUST00000121417 1065 ntBASIC18.13■□□□□ 0.49
Ccdc28aQ8CEI3 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Ccdc28aQ8CEI3 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc28aQ8CEI3 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc28aQ8CEI3 Mir6349-201ENSMUST00000184059 97 ntBASIC18.13■□□□□ 0.49
Ccdc28aQ8CEI3 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc28aQ8CEI3 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc28aQ8CEI3 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc28aQ8CEI3 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc28aQ8CEI3 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 41.4 ms