Protein–RNA interactions for Protein: Q8CDD9

Lrif1, Ligand-dependent nuclear receptor-interacting factor 1, mousemouse

Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lrif1Q8CDD9 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lrif1Q8CDD9 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lrif1Q8CDD9 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC17.04■□□□□ 0.32
Lrif1Q8CDD9 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lrif1Q8CDD9 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lrif1Q8CDD9 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lrif1Q8CDD9 Gm16499-203ENSMUST00000204633 2177 ntBASIC17.04■□□□□ 0.32
Lrif1Q8CDD9 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lrif1Q8CDD9 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lrif1Q8CDD9 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lrif1Q8CDD9 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lrif1Q8CDD9 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lrif1Q8CDD9 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Lrif1Q8CDD9 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lrif1Q8CDD9 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC17.03■□□□□ 0.32
Lrif1Q8CDD9 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Lrif1Q8CDD9 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Lrif1Q8CDD9 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Lrif1Q8CDD9 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Lrif1Q8CDD9 AC122769.4-201ENSMUST00000228166 901 ntBASIC17.03■□□□□ 0.32
Lrif1Q8CDD9 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC17.03■□□□□ 0.32
Lrif1Q8CDD9 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Lrif1Q8CDD9 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Lrif1Q8CDD9 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lrif1Q8CDD9 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC17.03■□□□□ 0.32
Lrif1Q8CDD9 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lrif1Q8CDD9 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Lrif1Q8CDD9 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lrif1Q8CDD9 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC17.02■□□□□ 0.32
Lrif1Q8CDD9 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lrif1Q8CDD9 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
Lrif1Q8CDD9 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Lrif1Q8CDD9 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lrif1Q8CDD9 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lrif1Q8CDD9 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lrif1Q8CDD9 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
Lrif1Q8CDD9 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Lrif1Q8CDD9 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lrif1Q8CDD9 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Lrif1Q8CDD9 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lrif1Q8CDD9 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lrif1Q8CDD9 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Lrif1Q8CDD9 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
Lrif1Q8CDD9 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Lrif1Q8CDD9 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Lrif1Q8CDD9 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Lrif1Q8CDD9 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Lrif1Q8CDD9 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Lrif1Q8CDD9 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lrif1Q8CDD9 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lrif1Q8CDD9 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lrif1Q8CDD9 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lrif1Q8CDD9 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lrif1Q8CDD9 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lrif1Q8CDD9 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lrif1Q8CDD9 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lrif1Q8CDD9 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lrif1Q8CDD9 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lrif1Q8CDD9 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC17.01■□□□□ 0.31
Lrif1Q8CDD9 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lrif1Q8CDD9 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lrif1Q8CDD9 Mir8112-201ENSMUST00000184382 131 ntBASIC17.01■□□□□ 0.31
Lrif1Q8CDD9 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Lrif1Q8CDD9 Rab3c-203ENSMUST00000224180 967 ntBASIC17.01■□□□□ 0.31
Lrif1Q8CDD9 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC17.01■□□□□ 0.31
Lrif1Q8CDD9 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Lrif1Q8CDD9 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lrif1Q8CDD9 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lrif1Q8CDD9 Gm43859-201ENSMUST00000200075 1412 ntBASIC17.01■□□□□ 0.31
Lrif1Q8CDD9 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Lrif1Q8CDD9 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lrif1Q8CDD9 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lrif1Q8CDD9 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lrif1Q8CDD9 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lrif1Q8CDD9 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Lrif1Q8CDD9 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lrif1Q8CDD9 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lrif1Q8CDD9 AC069562.2-201ENSMUST00000224644 2146 ntBASIC17■□□□□ 0.31
Lrif1Q8CDD9 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Lrif1Q8CDD9 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC17■□□□□ 0.31
Lrif1Q8CDD9 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC17■□□□□ 0.31
Lrif1Q8CDD9 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC17■□□□□ 0.31
Lrif1Q8CDD9 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC17■□□□□ 0.31
Lrif1Q8CDD9 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC17■□□□□ 0.31
Lrif1Q8CDD9 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC17■□□□□ 0.31
Lrif1Q8CDD9 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC17■□□□□ 0.31
Lrif1Q8CDD9 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC17■□□□□ 0.31
Lrif1Q8CDD9 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Lrif1Q8CDD9 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
Lrif1Q8CDD9 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Lrif1Q8CDD9 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Lrif1Q8CDD9 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
Lrif1Q8CDD9 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Lrif1Q8CDD9 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Lrif1Q8CDD9 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Lrif1Q8CDD9 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Lrif1Q8CDD9 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Lrif1Q8CDD9 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Lrif1Q8CDD9 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Lrif1Q8CDD9 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 43.5 ms