Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Trub1Q8C0D0 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trub1Q8C0D0 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Trub1Q8C0D0 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
Trub1Q8C0D0 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trub1Q8C0D0 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trub1Q8C0D0 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trub1Q8C0D0 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trub1Q8C0D0 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trub1Q8C0D0 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Trub1Q8C0D0 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Trub1Q8C0D0 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC17.74■□□□□ 0.43
Trub1Q8C0D0 Gm17661-201ENSMUST00000170317 270 ntBASIC17.74■□□□□ 0.43
Trub1Q8C0D0 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Trub1Q8C0D0 Gm37025-201ENSMUST00000195159 829 ntBASIC17.74■□□□□ 0.43
Trub1Q8C0D0 Gm16042-201ENSMUST00000204813 1247 ntBASIC17.74■□□□□ 0.43
Trub1Q8C0D0 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Trub1Q8C0D0 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC17.74■□□□□ 0.43
Trub1Q8C0D0 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trub1Q8C0D0 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Trub1Q8C0D0 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trub1Q8C0D0 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trub1Q8C0D0 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trub1Q8C0D0 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trub1Q8C0D0 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trub1Q8C0D0 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Trub1Q8C0D0 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Trub1Q8C0D0 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trub1Q8C0D0 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Trub1Q8C0D0 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trub1Q8C0D0 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trub1Q8C0D0 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trub1Q8C0D0 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Trub1Q8C0D0 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trub1Q8C0D0 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC17.73■□□□□ 0.43
Trub1Q8C0D0 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Trub1Q8C0D0 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trub1Q8C0D0 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC17.73■□□□□ 0.43
Trub1Q8C0D0 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trub1Q8C0D0 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trub1Q8C0D0 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trub1Q8C0D0 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trub1Q8C0D0 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
Trub1Q8C0D0 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trub1Q8C0D0 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trub1Q8C0D0 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trub1Q8C0D0 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Trub1Q8C0D0 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC17.72■□□□□ 0.43
Trub1Q8C0D0 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trub1Q8C0D0 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC17.72■□□□□ 0.43
Trub1Q8C0D0 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trub1Q8C0D0 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
Trub1Q8C0D0 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC17.72■□□□□ 0.43
Trub1Q8C0D0 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trub1Q8C0D0 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trub1Q8C0D0 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Trub1Q8C0D0 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trub1Q8C0D0 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trub1Q8C0D0 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trub1Q8C0D0 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trub1Q8C0D0 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Trub1Q8C0D0 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
Trub1Q8C0D0 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trub1Q8C0D0 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trub1Q8C0D0 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trub1Q8C0D0 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trub1Q8C0D0 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trub1Q8C0D0 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC17.71■□□□□ 0.43
Trub1Q8C0D0 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC17.71■□□□□ 0.43
Trub1Q8C0D0 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trub1Q8C0D0 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trub1Q8C0D0 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
Trub1Q8C0D0 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC17.71■□□□□ 0.43
Trub1Q8C0D0 Gm38027-201ENSMUST00000192315 235 ntBASIC17.71■□□□□ 0.43
Trub1Q8C0D0 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trub1Q8C0D0 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trub1Q8C0D0 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Trub1Q8C0D0 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trub1Q8C0D0 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Trub1Q8C0D0 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
Trub1Q8C0D0 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trub1Q8C0D0 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Trub1Q8C0D0 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Trub1Q8C0D0 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trub1Q8C0D0 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Trub1Q8C0D0 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trub1Q8C0D0 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trub1Q8C0D0 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trub1Q8C0D0 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Trub1Q8C0D0 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trub1Q8C0D0 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Trub1Q8C0D0 Gm715-201ENSMUST00000117865 831 ntBASIC17.7■□□□□ 0.42
Trub1Q8C0D0 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC17.7■□□□□ 0.42
Trub1Q8C0D0 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC17.7■□□□□ 0.42
Trub1Q8C0D0 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Trub1Q8C0D0 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC17.7■□□□□ 0.42
Trub1Q8C0D0 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trub1Q8C0D0 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trub1Q8C0D0 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Trub1Q8C0D0 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms