Protein–RNA interactions for Protein: Q6PE01

Snrnp40, U5 small nuclear ribonucleoprotein 40 kDa protein, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Snrnp40Q6PE01 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC15.12■□□□□ 0.01
Snrnp40Q6PE01 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Snrnp40Q6PE01 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Snrnp40Q6PE01 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC15.12■□□□□ 0.01
Snrnp40Q6PE01 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Snrnp40Q6PE01 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Snrnp40Q6PE01 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Snrnp40Q6PE01 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Snrnp40Q6PE01 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Snrnp40Q6PE01 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Snrnp40Q6PE01 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
Snrnp40Q6PE01 Gm11336-201ENSMUST00000118168 334 ntBASIC15.11■□□□□ 0.01
Snrnp40Q6PE01 Gm11452-201ENSMUST00000122376 690 ntBASIC15.11■□□□□ 0.01
Snrnp40Q6PE01 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC15.11■□□□□ 0.01
Snrnp40Q6PE01 Mir8112-201ENSMUST00000184382 131 ntBASIC15.11■□□□□ 0.01
Snrnp40Q6PE01 AC153889.1-201ENSMUST00000219257 330 ntBASIC15.11■□□□□ 0.01
Snrnp40Q6PE01 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Snrnp40Q6PE01 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC15.11■□□□□ 0.01
Snrnp40Q6PE01 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Snrnp40Q6PE01 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Snrnp40Q6PE01 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Snrnp40Q6PE01 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Snrnp40Q6PE01 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Snrnp40Q6PE01 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Snrnp40Q6PE01 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Snrnp40Q6PE01 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Snrnp40Q6PE01 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Snrnp40Q6PE01 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Snrnp40Q6PE01 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC15.1■□□□□ 0.01
Snrnp40Q6PE01 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Snrnp40Q6PE01 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Snrnp40Q6PE01 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Snrnp40Q6PE01 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Snrnp40Q6PE01 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC15.1■□□□□ 0.01
Snrnp40Q6PE01 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Snrnp40Q6PE01 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Snrnp40Q6PE01 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC15.1■□□□□ 0.01
Snrnp40Q6PE01 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC15.1■□□□□ 0.01
Snrnp40Q6PE01 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC15.1■□□□□ 0.01
Snrnp40Q6PE01 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Snrnp40Q6PE01 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
Snrnp40Q6PE01 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC15.1■□□□□ 0.01
Snrnp40Q6PE01 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Snrnp40Q6PE01 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Snrnp40Q6PE01 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Snrnp40Q6PE01 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Snrnp40Q6PE01 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Snrnp40Q6PE01 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Snrnp40Q6PE01 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Snrnp40Q6PE01 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Snrnp40Q6PE01 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Snrnp40Q6PE01 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Snrnp40Q6PE01 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Snrnp40Q6PE01 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Snrnp40Q6PE01 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Snrnp40Q6PE01 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Snrnp40Q6PE01 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Snrnp40Q6PE01 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Snrnp40Q6PE01 Gm10052-201ENSMUST00000168019 960 ntBASIC15.09■□□□□ 0.01
Snrnp40Q6PE01 Gm18733-201ENSMUST00000173950 856 ntBASIC15.09■□□□□ 0.01
Snrnp40Q6PE01 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Snrnp40Q6PE01 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Snrnp40Q6PE01 Gm7729-201ENSMUST00000050143 801 ntBASIC15.09■□□□□ 0.01
Snrnp40Q6PE01 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Snrnp40Q6PE01 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Snrnp40Q6PE01 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC15.09■□□□□ 0.01
Snrnp40Q6PE01 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Snrnp40Q6PE01 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Snrnp40Q6PE01 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Snrnp40Q6PE01 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC15.09■□□□□ 0.01
Snrnp40Q6PE01 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Snrnp40Q6PE01 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Snrnp40Q6PE01 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC15.08■□□□□ 0.01
Snrnp40Q6PE01 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Snrnp40Q6PE01 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Snrnp40Q6PE01 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Snrnp40Q6PE01 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC15.08■□□□□ 0
Snrnp40Q6PE01 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Snrnp40Q6PE01 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC15.08■□□□□ 0
Snrnp40Q6PE01 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC15.08■□□□□ 0
Snrnp40Q6PE01 Gm25925-201ENSMUST00000158314 306 ntBASIC15.08■□□□□ 0
Snrnp40Q6PE01 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Snrnp40Q6PE01 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC15.08■□□□□ 0
Snrnp40Q6PE01 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Snrnp40Q6PE01 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC15.08■□□□□ 0
Snrnp40Q6PE01 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Snrnp40Q6PE01 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Snrnp40Q6PE01 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Snrnp40Q6PE01 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Snrnp40Q6PE01 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC15.08■□□□□ 0
Snrnp40Q6PE01 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Snrnp40Q6PE01 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Snrnp40Q6PE01 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC15.08■□□□□ 0
Snrnp40Q6PE01 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Snrnp40Q6PE01 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Snrnp40Q6PE01 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Snrnp40Q6PE01 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Snrnp40Q6PE01 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Snrnp40Q6PE01 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Snrnp40Q6PE01 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC15.07■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms