Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Hmgb4Q6P8W9 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
Hmgb4Q6P8W9 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Hmgb4Q6P8W9 Gm6598-201ENSMUST00000202719 2615 ntBASIC18.02■□□□□ 0.48
Hmgb4Q6P8W9 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC18.02■□□□□ 0.48
Hmgb4Q6P8W9 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC18.02■□□□□ 0.48
Hmgb4Q6P8W9 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Hmgb4Q6P8W9 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
Hmgb4Q6P8W9 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
Hmgb4Q6P8W9 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC18.02■□□□□ 0.48
Hmgb4Q6P8W9 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Hmgb4Q6P8W9 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Hmgb4Q6P8W9 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
Hmgb4Q6P8W9 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Hmgb4Q6P8W9 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Hmgb4Q6P8W9 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC18.01■□□□□ 0.47
Hmgb4Q6P8W9 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Hmgb4Q6P8W9 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Hmgb4Q6P8W9 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
Hmgb4Q6P8W9 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC18.01■□□□□ 0.47
Hmgb4Q6P8W9 Gm15635-204ENSMUST00000208024 2539 ntBASIC18.01■□□□□ 0.47
Hmgb4Q6P8W9 Gm10013-201ENSMUST00000106074 672 ntBASIC18.01■□□□□ 0.47
Hmgb4Q6P8W9 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Hmgb4Q6P8W9 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Hmgb4Q6P8W9 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Hmgb4Q6P8W9 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
Hmgb4Q6P8W9 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Hmgb4Q6P8W9 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Hmgb4Q6P8W9 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Hmgb4Q6P8W9 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Hmgb4Q6P8W9 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Hmgb4Q6P8W9 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
Hmgb4Q6P8W9 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Hmgb4Q6P8W9 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Hmgb4Q6P8W9 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Hmgb4Q6P8W9 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC18■□□□□ 0.47
Hmgb4Q6P8W9 Gm13401-201ENSMUST00000117074 291 ntBASIC18■□□□□ 0.47
Hmgb4Q6P8W9 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Hmgb4Q6P8W9 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC18■□□□□ 0.47
Hmgb4Q6P8W9 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Hmgb4Q6P8W9 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC18■□□□□ 0.47
Hmgb4Q6P8W9 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC18■□□□□ 0.47
Hmgb4Q6P8W9 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Hmgb4Q6P8W9 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Hmgb4Q6P8W9 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC18■□□□□ 0.47
Hmgb4Q6P8W9 Tgds-204ENSMUST00000228543 1594 ntBASIC18■□□□□ 0.47
Hmgb4Q6P8W9 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Hmgb4Q6P8W9 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Hmgb4Q6P8W9 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
Hmgb4Q6P8W9 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Hmgb4Q6P8W9 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Hmgb4Q6P8W9 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Hmgb4Q6P8W9 Gm5898-201ENSMUST00000121016 2071 ntBASIC17.99■□□□□ 0.47
Hmgb4Q6P8W9 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Hmgb4Q6P8W9 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Hmgb4Q6P8W9 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Hmgb4Q6P8W9 Gm4217-201ENSMUST00000182243 1002 ntBASIC17.99■□□□□ 0.47
Hmgb4Q6P8W9 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC17.99■□□□□ 0.47
Hmgb4Q6P8W9 Gm18032-201ENSMUST00000222541 538 ntBASIC17.99■□□□□ 0.47
Hmgb4Q6P8W9 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Hmgb4Q6P8W9 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Hmgb4Q6P8W9 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC17.99■□□□□ 0.47
Hmgb4Q6P8W9 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
Hmgb4Q6P8W9 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Hmgb4Q6P8W9 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Hmgb4Q6P8W9 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
Hmgb4Q6P8W9 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Hmgb4Q6P8W9 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC17.99■□□□□ 0.47
Hmgb4Q6P8W9 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Hmgb4Q6P8W9 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Hmgb4Q6P8W9 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Hmgb4Q6P8W9 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Hmgb4Q6P8W9 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Hmgb4Q6P8W9 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Hmgb4Q6P8W9 Gm6728-201ENSMUST00000178117 1065 ntBASIC17.98■□□□□ 0.47
Hmgb4Q6P8W9 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC17.98■□□□□ 0.47
Hmgb4Q6P8W9 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC17.98■□□□□ 0.47
Hmgb4Q6P8W9 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Hmgb4Q6P8W9 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Hmgb4Q6P8W9 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Hmgb4Q6P8W9 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Hmgb4Q6P8W9 Gm43548-201ENSMUST00000197139 2353 ntBASIC17.98■□□□□ 0.47
Hmgb4Q6P8W9 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Hmgb4Q6P8W9 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Hmgb4Q6P8W9 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC17.98■□□□□ 0.47
Hmgb4Q6P8W9 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
Hmgb4Q6P8W9 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Hmgb4Q6P8W9 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC17.98■□□□□ 0.47
Hmgb4Q6P8W9 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Hmgb4Q6P8W9 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Hmgb4Q6P8W9 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Hmgb4Q6P8W9 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
Hmgb4Q6P8W9 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Hmgb4Q6P8W9 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC17.97■□□□□ 0.47
Hmgb4Q6P8W9 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Hmgb4Q6P8W9 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Hmgb4Q6P8W9 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Hmgb4Q6P8W9 Gm10459-201ENSMUST00000202708 1155 ntBASIC17.97■□□□□ 0.47
Hmgb4Q6P8W9 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Hmgb4Q6P8W9 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 20.8 ms