Protein–RNA interactions for Protein: Q6P1Y1

Rtl3, Retrotransposon Gag-like protein 3, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rtl3Q6P1Y1 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Rtl3Q6P1Y1 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rtl3Q6P1Y1 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rtl3Q6P1Y1 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Rtl3Q6P1Y1 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rtl3Q6P1Y1 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC17.8■□□□□ 0.44
Rtl3Q6P1Y1 Gm11539-201ENSMUST00000119837 557 ntBASIC17.8■□□□□ 0.44
Rtl3Q6P1Y1 Gm13436-201ENSMUST00000120418 567 ntBASIC17.8■□□□□ 0.44
Rtl3Q6P1Y1 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Rtl3Q6P1Y1 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rtl3Q6P1Y1 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC17.8■□□□□ 0.44
Rtl3Q6P1Y1 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rtl3Q6P1Y1 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Rtl3Q6P1Y1 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rtl3Q6P1Y1 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC17.8■□□□□ 0.44
Rtl3Q6P1Y1 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rtl3Q6P1Y1 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Rtl3Q6P1Y1 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC17.79■□□□□ 0.44
Rtl3Q6P1Y1 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC17.79■□□□□ 0.44
Rtl3Q6P1Y1 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rtl3Q6P1Y1 AC125311.2-201ENSMUST00000227477 1940 ntBASIC17.79■□□□□ 0.44
Rtl3Q6P1Y1 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rtl3Q6P1Y1 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
Rtl3Q6P1Y1 Gm7638-201ENSMUST00000121348 967 ntBASIC17.79■□□□□ 0.44
Rtl3Q6P1Y1 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Rtl3Q6P1Y1 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
Rtl3Q6P1Y1 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Rtl3Q6P1Y1 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rtl3Q6P1Y1 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rtl3Q6P1Y1 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rtl3Q6P1Y1 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Rtl3Q6P1Y1 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rtl3Q6P1Y1 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rtl3Q6P1Y1 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rtl3Q6P1Y1 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC17.79■□□□□ 0.44
Rtl3Q6P1Y1 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Rtl3Q6P1Y1 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Rtl3Q6P1Y1 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Rtl3Q6P1Y1 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rtl3Q6P1Y1 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Rtl3Q6P1Y1 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rtl3Q6P1Y1 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC17.78■□□□□ 0.44
Rtl3Q6P1Y1 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rtl3Q6P1Y1 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
Rtl3Q6P1Y1 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rtl3Q6P1Y1 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC17.78■□□□□ 0.44
Rtl3Q6P1Y1 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rtl3Q6P1Y1 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Rtl3Q6P1Y1 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rtl3Q6P1Y1 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Rtl3Q6P1Y1 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Rtl3Q6P1Y1 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Rtl3Q6P1Y1 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rtl3Q6P1Y1 Gm37025-201ENSMUST00000195159 829 ntBASIC17.77■□□□□ 0.44
Rtl3Q6P1Y1 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Rtl3Q6P1Y1 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Rtl3Q6P1Y1 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Rtl3Q6P1Y1 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rtl3Q6P1Y1 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rtl3Q6P1Y1 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Rtl3Q6P1Y1 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Rtl3Q6P1Y1 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Rtl3Q6P1Y1 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rtl3Q6P1Y1 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rtl3Q6P1Y1 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rtl3Q6P1Y1 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC17.76■□□□□ 0.43
Rtl3Q6P1Y1 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rtl3Q6P1Y1 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rtl3Q6P1Y1 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rtl3Q6P1Y1 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Rtl3Q6P1Y1 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rtl3Q6P1Y1 Gm27463-201ENSMUST00000183569 57 ntBASIC17.76■□□□□ 0.43
Rtl3Q6P1Y1 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC17.76■□□□□ 0.43
Rtl3Q6P1Y1 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Rtl3Q6P1Y1 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rtl3Q6P1Y1 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rtl3Q6P1Y1 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rtl3Q6P1Y1 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rtl3Q6P1Y1 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Rtl3Q6P1Y1 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rtl3Q6P1Y1 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rtl3Q6P1Y1 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
Rtl3Q6P1Y1 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC17.75■□□□□ 0.43
Rtl3Q6P1Y1 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Rtl3Q6P1Y1 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rtl3Q6P1Y1 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rtl3Q6P1Y1 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rtl3Q6P1Y1 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Rtl3Q6P1Y1 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC17.75■□□□□ 0.43
Rtl3Q6P1Y1 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rtl3Q6P1Y1 Gm44832-201ENSMUST00000208849 2303 ntBASIC17.75■□□□□ 0.43
Rtl3Q6P1Y1 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rtl3Q6P1Y1 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Rtl3Q6P1Y1 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
Rtl3Q6P1Y1 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rtl3Q6P1Y1 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Rtl3Q6P1Y1 Gm9731-201ENSMUST00000209480 747 ntBASIC17.74■□□□□ 0.43
Rtl3Q6P1Y1 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rtl3Q6P1Y1 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rtl3Q6P1Y1 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC17.74■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 19.4 ms