Protein–RNA interactions for Protein: Q6IFX3

Krt40, Keratin, type I cytoskeletal 40, mousemouse

Predictions only

Length 439 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Krt40Q6IFX3 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC20.26■□□□□ 0.83
Krt40Q6IFX3 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Krt40Q6IFX3 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Krt40Q6IFX3 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Krt40Q6IFX3 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Krt40Q6IFX3 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Krt40Q6IFX3 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC20.25■□□□□ 0.83
Krt40Q6IFX3 Gm43182-201ENSMUST00000199476 2528 ntBASIC20.25■□□□□ 0.83
Krt40Q6IFX3 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Krt40Q6IFX3 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Krt40Q6IFX3 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC20.25■□□□□ 0.83
Krt40Q6IFX3 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Krt40Q6IFX3 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Krt40Q6IFX3 AC154471.1-201ENSMUST00000224418 436 ntBASIC20.25■□□□□ 0.83
Krt40Q6IFX3 Fcho2-208ENSMUST00000224992 2964 ntBASIC20.25■□□□□ 0.83
Krt40Q6IFX3 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Krt40Q6IFX3 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Krt40Q6IFX3 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Krt40Q6IFX3 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Krt40Q6IFX3 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Krt40Q6IFX3 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC20.25■□□□□ 0.83
Krt40Q6IFX3 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Krt40Q6IFX3 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Krt40Q6IFX3 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Krt40Q6IFX3 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Krt40Q6IFX3 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Krt40Q6IFX3 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Krt40Q6IFX3 Gm10459-201ENSMUST00000202708 1155 ntBASIC20.24■□□□□ 0.83
Krt40Q6IFX3 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC20.24■□□□□ 0.83
Krt40Q6IFX3 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Krt40Q6IFX3 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Krt40Q6IFX3 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
Krt40Q6IFX3 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Krt40Q6IFX3 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Krt40Q6IFX3 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Krt40Q6IFX3 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Krt40Q6IFX3 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Krt40Q6IFX3 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Krt40Q6IFX3 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Krt40Q6IFX3 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Krt40Q6IFX3 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Krt40Q6IFX3 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Krt40Q6IFX3 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC20.23■□□□□ 0.83
Krt40Q6IFX3 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Krt40Q6IFX3 Gm29518-201ENSMUST00000190858 372 ntBASIC20.23■□□□□ 0.83
Krt40Q6IFX3 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Krt40Q6IFX3 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC20.23■□□□□ 0.83
Krt40Q6IFX3 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Krt40Q6IFX3 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Krt40Q6IFX3 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Krt40Q6IFX3 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC20.23■□□□□ 0.83
Krt40Q6IFX3 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Krt40Q6IFX3 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Krt40Q6IFX3 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Krt40Q6IFX3 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Krt40Q6IFX3 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Krt40Q6IFX3 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Krt40Q6IFX3 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Krt40Q6IFX3 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC20.22■□□□□ 0.83
Krt40Q6IFX3 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Krt40Q6IFX3 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Krt40Q6IFX3 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
Krt40Q6IFX3 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC20.22■□□□□ 0.83
Krt40Q6IFX3 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC20.22■□□□□ 0.83
Krt40Q6IFX3 Gm37722-201ENSMUST00000193757 208 ntBASIC20.22■□□□□ 0.83
Krt40Q6IFX3 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Krt40Q6IFX3 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Krt40Q6IFX3 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Krt40Q6IFX3 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC20.22■□□□□ 0.83
Krt40Q6IFX3 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Krt40Q6IFX3 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Krt40Q6IFX3 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC20.21■□□□□ 0.83
Krt40Q6IFX3 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Krt40Q6IFX3 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Krt40Q6IFX3 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC20.21■□□□□ 0.83
Krt40Q6IFX3 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC20.21■□□□□ 0.83
Krt40Q6IFX3 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC20.21■□□□□ 0.83
Krt40Q6IFX3 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Krt40Q6IFX3 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Krt40Q6IFX3 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Krt40Q6IFX3 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Krt40Q6IFX3 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Krt40Q6IFX3 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC20.21■□□□□ 0.83
Krt40Q6IFX3 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Krt40Q6IFX3 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Krt40Q6IFX3 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Krt40Q6IFX3 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Krt40Q6IFX3 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Krt40Q6IFX3 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Krt40Q6IFX3 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC20.21■□□□□ 0.83
Krt40Q6IFX3 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Krt40Q6IFX3 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC20.2■□□□□ 0.82
Krt40Q6IFX3 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Krt40Q6IFX3 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Krt40Q6IFX3 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Krt40Q6IFX3 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
Krt40Q6IFX3 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Krt40Q6IFX3 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC20.2■□□□□ 0.82
Krt40Q6IFX3 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
Krt40Q6IFX3 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 35.9 ms