Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col7a1Q63870 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Col7a1Q63870 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC14.31□□□□□ -0.12
Col7a1Q63870 Gm11025-201ENSMUST00000140773 466 ntBASIC14.31□□□□□ -0.12
Col7a1Q63870 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col7a1Q63870 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Col7a1Q63870 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col7a1Q63870 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col7a1Q63870 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col7a1Q63870 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col7a1Q63870 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC14.31□□□□□ -0.12
Col7a1Q63870 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Col7a1Q63870 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col7a1Q63870 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Col7a1Q63870 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC14.31□□□□□ -0.12
Col7a1Q63870 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC14.31□□□□□ -0.12
Col7a1Q63870 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col7a1Q63870 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Col7a1Q63870 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Col7a1Q63870 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Col7a1Q63870 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC14.31□□□□□ -0.12
Col7a1Q63870 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col7a1Q63870 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col7a1Q63870 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col7a1Q63870 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC14.31□□□□□ -0.12
Col7a1Q63870 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Col7a1Q63870 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col7a1Q63870 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col7a1Q63870 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col7a1Q63870 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col7a1Q63870 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col7a1Q63870 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col7a1Q63870 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Col7a1Q63870 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC14.3□□□□□ -0.12
Col7a1Q63870 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC14.3□□□□□ -0.12
Col7a1Q63870 AC139382.1-201ENSMUST00000221402 498 ntBASIC14.3□□□□□ -0.12
Col7a1Q63870 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col7a1Q63870 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col7a1Q63870 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Col7a1Q63870 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC14.3□□□□□ -0.12
Col7a1Q63870 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC14.3□□□□□ -0.12
Col7a1Q63870 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC14.3□□□□□ -0.12
Col7a1Q63870 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col7a1Q63870 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Col7a1Q63870 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col7a1Q63870 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col7a1Q63870 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Col7a1Q63870 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC14.29□□□□□ -0.12
Col7a1Q63870 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col7a1Q63870 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col7a1Q63870 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC14.29□□□□□ -0.12
Col7a1Q63870 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col7a1Q63870 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
Col7a1Q63870 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC14.29□□□□□ -0.12
Col7a1Q63870 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC14.29□□□□□ -0.12
Col7a1Q63870 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col7a1Q63870 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Col7a1Q63870 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col7a1Q63870 Phf7-203ENSMUST00000226565 1971 ntBASIC14.29□□□□□ -0.12
Col7a1Q63870 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
Col7a1Q63870 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Col7a1Q63870 Gm6184-201ENSMUST00000120403 1261 ntBASIC14.28□□□□□ -0.12
Col7a1Q63870 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col7a1Q63870 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col7a1Q63870 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col7a1Q63870 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Col7a1Q63870 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col7a1Q63870 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Col7a1Q63870 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Col7a1Q63870 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col7a1Q63870 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Col7a1Q63870 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Col7a1Q63870 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col7a1Q63870 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC14.28□□□□□ -0.12
Col7a1Q63870 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC14.28□□□□□ -0.12
Col7a1Q63870 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Col7a1Q63870 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col7a1Q63870 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Col7a1Q63870 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col7a1Q63870 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col7a1Q63870 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC14.28□□□□□ -0.12
Col7a1Q63870 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col7a1Q63870 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col7a1Q63870 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col7a1Q63870 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
Col7a1Q63870 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.12
Col7a1Q63870 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.12
Col7a1Q63870 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC14.27□□□□□ -0.12
Col7a1Q63870 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Col7a1Q63870 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Col7a1Q63870 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
Col7a1Q63870 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC14.27□□□□□ -0.13
Col7a1Q63870 Gm42922-201ENSMUST00000195887 2078 ntBASIC14.27□□□□□ -0.13
Col7a1Q63870 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col7a1Q63870 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
Col7a1Q63870 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC14.27□□□□□ -0.13
Col7a1Q63870 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col7a1Q63870 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col7a1Q63870 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Col7a1Q63870 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms