Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
Nr1h4Q60641 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Nr1h4Q60641 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Nr1h4Q60641 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Nr1h4Q60641 AC125311.2-201ENSMUST00000227477 1940 ntBASIC16.43■□□□□ 0.22
Nr1h4Q60641 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Nr1h4Q60641 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Nr1h4Q60641 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Nr1h4Q60641 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Nr1h4Q60641 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Nr1h4Q60641 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Nr1h4Q60641 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC16.43■□□□□ 0.22
Nr1h4Q60641 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Nr1h4Q60641 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Nr1h4Q60641 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Nr1h4Q60641 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Nr1h4Q60641 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Nr1h4Q60641 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC16.43■□□□□ 0.22
Nr1h4Q60641 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC16.43■□□□□ 0.22
Nr1h4Q60641 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Nr1h4Q60641 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Nr1h4Q60641 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Nr1h4Q60641 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Nr1h4Q60641 Gm16401-202ENSMUST00000197463 2074 ntBASIC16.42■□□□□ 0.22
Nr1h4Q60641 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Nr1h4Q60641 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC16.42■□□□□ 0.22
Nr1h4Q60641 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Nr1h4Q60641 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Nr1h4Q60641 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Nr1h4Q60641 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Nr1h4Q60641 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Nr1h4Q60641 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Nr1h4Q60641 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC16.42■□□□□ 0.22
Nr1h4Q60641 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Nr1h4Q60641 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Nr1h4Q60641 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC16.42■□□□□ 0.22
Nr1h4Q60641 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Nr1h4Q60641 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Nr1h4Q60641 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Nr1h4Q60641 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Nr1h4Q60641 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Nr1h4Q60641 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Nr1h4Q60641 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Nr1h4Q60641 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Nr1h4Q60641 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Nr1h4Q60641 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Nr1h4Q60641 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Nr1h4Q60641 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Nr1h4Q60641 Gm7292-201ENSMUST00000194706 2527 ntBASIC16.41■□□□□ 0.22
Nr1h4Q60641 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC16.41■□□□□ 0.22
Nr1h4Q60641 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Nr1h4Q60641 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Nr1h4Q60641 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Nr1h4Q60641 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Nr1h4Q60641 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Nr1h4Q60641 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Nr1h4Q60641 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC16.41■□□□□ 0.22
Nr1h4Q60641 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Nr1h4Q60641 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Nr1h4Q60641 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Nr1h4Q60641 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Nr1h4Q60641 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC16.41■□□□□ 0.22
Nr1h4Q60641 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Nr1h4Q60641 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
Nr1h4Q60641 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Nr1h4Q60641 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Nr1h4Q60641 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC16.4■□□□□ 0.22
Nr1h4Q60641 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Nr1h4Q60641 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Nr1h4Q60641 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Nr1h4Q60641 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Nr1h4Q60641 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Nr1h4Q60641 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Nr1h4Q60641 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC16.4■□□□□ 0.22
Nr1h4Q60641 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Nr1h4Q60641 Mir2861-201ENSMUST00000175539 82 ntBASIC16.4■□□□□ 0.22
Nr1h4Q60641 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Nr1h4Q60641 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Nr1h4Q60641 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Nr1h4Q60641 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Nr1h4Q60641 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Nr1h4Q60641 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Nr1h4Q60641 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
Nr1h4Q60641 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Nr1h4Q60641 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC16.39■□□□□ 0.21
Nr1h4Q60641 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Nr1h4Q60641 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Nr1h4Q60641 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Nr1h4Q60641 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Nr1h4Q60641 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Nr1h4Q60641 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Nr1h4Q60641 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Nr1h4Q60641 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Nr1h4Q60641 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC16.39■□□□□ 0.21
Nr1h4Q60641 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
Nr1h4Q60641 Gm42555-201ENSMUST00000199304 1039 ntBASIC16.39■□□□□ 0.21
Nr1h4Q60641 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Nr1h4Q60641 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Nr1h4Q60641 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Nr1h4Q60641 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms