Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Usp28Q5I043 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Usp28Q5I043 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Usp28Q5I043 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Usp28Q5I043 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Usp28Q5I043 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
Usp28Q5I043 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
Usp28Q5I043 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Usp28Q5I043 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
Usp28Q5I043 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC19.54■□□□□ 0.72
Usp28Q5I043 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Usp28Q5I043 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Usp28Q5I043 Gm12527-201ENSMUST00000117967 564 ntBASIC19.54■□□□□ 0.72
Usp28Q5I043 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC19.54■□□□□ 0.72
Usp28Q5I043 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC19.54■□□□□ 0.72
Usp28Q5I043 Gm4974-201ENSMUST00000209974 875 ntBASIC19.54■□□□□ 0.72
Usp28Q5I043 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Usp28Q5I043 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Usp28Q5I043 Gm28265-201ENSMUST00000188201 2319 ntBASIC19.54■□□□□ 0.72
Usp28Q5I043 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Usp28Q5I043 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Usp28Q5I043 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Usp28Q5I043 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Usp28Q5I043 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Usp28Q5I043 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Usp28Q5I043 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Usp28Q5I043 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Usp28Q5I043 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Usp28Q5I043 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Usp28Q5I043 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Usp28Q5I043 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Usp28Q5I043 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Usp28Q5I043 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Usp28Q5I043 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Usp28Q5I043 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC19.52■□□□□ 0.72
Usp28Q5I043 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC19.52■□□□□ 0.72
Usp28Q5I043 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usp28Q5I043 Gm12441-201ENSMUST00000121806 588 ntBASIC19.52■□□□□ 0.72
Usp28Q5I043 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usp28Q5I043 Gm37856-201ENSMUST00000191634 999 ntBASIC19.52■□□□□ 0.72
Usp28Q5I043 Gm10517-202ENSMUST00000192970 758 ntBASIC19.52■□□□□ 0.72
Usp28Q5I043 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usp28Q5I043 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
Usp28Q5I043 Gm20628-201ENSMUST00000177363 3215 ntBASIC19.52■□□□□ 0.72
Usp28Q5I043 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usp28Q5I043 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.71
Usp28Q5I043 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
Usp28Q5I043 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp28Q5I043 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp28Q5I043 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp28Q5I043 Gm8839-201ENSMUST00000121279 1645 ntBASIC19.51■□□□□ 0.71
Usp28Q5I043 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp28Q5I043 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
Usp28Q5I043 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Usp28Q5I043 Gm12382-201ENSMUST00000122005 922 ntBASIC19.51■□□□□ 0.71
Usp28Q5I043 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC19.51■□□□□ 0.71
Usp28Q5I043 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC19.51■□□□□ 0.71
Usp28Q5I043 Slc35b2-207ENSMUST00000226086 850 ntBASIC19.51■□□□□ 0.71
Usp28Q5I043 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp28Q5I043 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp28Q5I043 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC19.51■□□□□ 0.71
Usp28Q5I043 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp28Q5I043 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp28Q5I043 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usp28Q5I043 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usp28Q5I043 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Usp28Q5I043 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usp28Q5I043 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
Usp28Q5I043 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
Usp28Q5I043 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usp28Q5I043 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
Usp28Q5I043 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Usp28Q5I043 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC19.5■□□□□ 0.71
Usp28Q5I043 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usp28Q5I043 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Usp28Q5I043 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC19.5■□□□□ 0.71
Usp28Q5I043 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usp28Q5I043 Gm36858-201ENSMUST00000194501 2391 ntBASIC19.5■□□□□ 0.71
Usp28Q5I043 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usp28Q5I043 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usp28Q5I043 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usp28Q5I043 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Usp28Q5I043 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usp28Q5I043 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usp28Q5I043 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
Usp28Q5I043 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC19.49■□□□□ 0.71
Usp28Q5I043 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usp28Q5I043 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usp28Q5I043 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usp28Q5I043 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usp28Q5I043 Hivep3-201ENSMUST00000084306 2973 ntBASIC19.49■□□□□ 0.71
Usp28Q5I043 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usp28Q5I043 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Usp28Q5I043 Gm24841-201ENSMUST00000158676 357 ntBASIC19.49■□□□□ 0.71
Usp28Q5I043 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC19.49■□□□□ 0.71
Usp28Q5I043 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Usp28Q5I043 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usp28Q5I043 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usp28Q5I043 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usp28Q5I043 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 20.9 ms