Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm37055-201ENSMUST00000191866 133 ntBASIC18.42■□□□□ 0.54
Upf3bQ3ULL6 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC18.42■□□□□ 0.54
Upf3bQ3ULL6 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Upf3bQ3ULL6 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Upf3bQ3ULL6 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Upf3bQ3ULL6 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Upf3bQ3ULL6 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Upf3bQ3ULL6 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Upf3bQ3ULL6 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Upf3bQ3ULL6 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Upf3bQ3ULL6 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
Upf3bQ3ULL6 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Upf3bQ3ULL6 Gm37025-201ENSMUST00000195159 829 ntBASIC18.41■□□□□ 0.54
Upf3bQ3ULL6 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Upf3bQ3ULL6 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Upf3bQ3ULL6 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC18.41■□□□□ 0.54
Upf3bQ3ULL6 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Upf3bQ3ULL6 Gm5417-201ENSMUST00000079706 384 ntBASIC18.41■□□□□ 0.54
Upf3bQ3ULL6 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Upf3bQ3ULL6 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Upf3bQ3ULL6 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Upf3bQ3ULL6 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Upf3bQ3ULL6 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Upf3bQ3ULL6 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC18.41■□□□□ 0.54
Upf3bQ3ULL6 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Upf3bQ3ULL6 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Upf3bQ3ULL6 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Upf3bQ3ULL6 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Upf3bQ3ULL6 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC18.4■□□□□ 0.54
Upf3bQ3ULL6 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Upf3bQ3ULL6 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Upf3bQ3ULL6 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC18.4■□□□□ 0.54
Upf3bQ3ULL6 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
Upf3bQ3ULL6 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Upf3bQ3ULL6 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Upf3bQ3ULL6 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Upf3bQ3ULL6 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Upf3bQ3ULL6 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Upf3bQ3ULL6 Gm9484-201ENSMUST00000195892 1159 ntBASIC18.4■□□□□ 0.54
Upf3bQ3ULL6 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Upf3bQ3ULL6 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Upf3bQ3ULL6 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Upf3bQ3ULL6 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Upf3bQ3ULL6 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
Upf3bQ3ULL6 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Upf3bQ3ULL6 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Upf3bQ3ULL6 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Upf3bQ3ULL6 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Upf3bQ3ULL6 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Upf3bQ3ULL6 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Upf3bQ3ULL6 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC18.39■□□□□ 0.53
Upf3bQ3ULL6 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Upf3bQ3ULL6 Gm6598-201ENSMUST00000202719 2615 ntBASIC18.39■□□□□ 0.53
Upf3bQ3ULL6 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Upf3bQ3ULL6 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Upf3bQ3ULL6 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Upf3bQ3ULL6 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Upf3bQ3ULL6 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Upf3bQ3ULL6 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Upf3bQ3ULL6 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Upf3bQ3ULL6 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Upf3bQ3ULL6 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Upf3bQ3ULL6 Gm7638-201ENSMUST00000121348 967 ntBASIC18.38■□□□□ 0.53
Upf3bQ3ULL6 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
Upf3bQ3ULL6 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Upf3bQ3ULL6 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC18.38■□□□□ 0.53
Upf3bQ3ULL6 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Upf3bQ3ULL6 AC135963.1-201ENSMUST00000211640 717 ntBASIC18.38■□□□□ 0.53
Upf3bQ3ULL6 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Upf3bQ3ULL6 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Upf3bQ3ULL6 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Upf3bQ3ULL6 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Upf3bQ3ULL6 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Upf3bQ3ULL6 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Upf3bQ3ULL6 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Upf3bQ3ULL6 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC18.38■□□□□ 0.53
Upf3bQ3ULL6 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Upf3bQ3ULL6 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Upf3bQ3ULL6 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Upf3bQ3ULL6 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Upf3bQ3ULL6 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
Upf3bQ3ULL6 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Upf3bQ3ULL6 Gm37519-201ENSMUST00000191687 2210 ntBASIC18.37■□□□□ 0.53
Upf3bQ3ULL6 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Upf3bQ3ULL6 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Upf3bQ3ULL6 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC18.37■□□□□ 0.53
Upf3bQ3ULL6 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
Upf3bQ3ULL6 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC18.37■□□□□ 0.53
Upf3bQ3ULL6 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Upf3bQ3ULL6 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Upf3bQ3ULL6 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Upf3bQ3ULL6 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Upf3bQ3ULL6 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC18.37■□□□□ 0.53
Upf3bQ3ULL6 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
Upf3bQ3ULL6 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Upf3bQ3ULL6 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC18.37■□□□□ 0.53
Upf3bQ3ULL6 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Upf3bQ3ULL6 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Upf3bQ3ULL6 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Upf3bQ3ULL6 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 49 ms