Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Limch1Q3UH68 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Limch1Q3UH68 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
Limch1Q3UH68 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Limch1Q3UH68 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Limch1Q3UH68 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Limch1Q3UH68 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Limch1Q3UH68 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Limch1Q3UH68 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Limch1Q3UH68 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Limch1Q3UH68 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Limch1Q3UH68 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Limch1Q3UH68 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Limch1Q3UH68 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Limch1Q3UH68 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Limch1Q3UH68 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Limch1Q3UH68 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Limch1Q3UH68 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Limch1Q3UH68 Gm16042-201ENSMUST00000204813 1247 ntBASIC20.25■□□□□ 0.83
Limch1Q3UH68 Arhgef4-208ENSMUST00000211073 171 ntBASIC20.25■□□□□ 0.83
Limch1Q3UH68 AC166341.7-201ENSMUST00000221698 126 ntBASIC20.25■□□□□ 0.83
Limch1Q3UH68 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Limch1Q3UH68 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Limch1Q3UH68 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Limch1Q3UH68 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Limch1Q3UH68 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Limch1Q3UH68 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Limch1Q3UH68 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Limch1Q3UH68 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Limch1Q3UH68 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Limch1Q3UH68 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC20.24■□□□□ 0.83
Limch1Q3UH68 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Limch1Q3UH68 Gm42545-201ENSMUST00000202755 922 ntBASIC20.24■□□□□ 0.83
Limch1Q3UH68 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Limch1Q3UH68 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Limch1Q3UH68 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Limch1Q3UH68 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Limch1Q3UH68 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
Limch1Q3UH68 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Limch1Q3UH68 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Limch1Q3UH68 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Limch1Q3UH68 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Limch1Q3UH68 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Limch1Q3UH68 Gm9954-202ENSMUST00000198686 4725 ntBASIC20.23■□□□□ 0.83
Limch1Q3UH68 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Limch1Q3UH68 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Limch1Q3UH68 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Limch1Q3UH68 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Limch1Q3UH68 Gm30025-201ENSMUST00000218555 728 ntBASIC20.23■□□□□ 0.83
Limch1Q3UH68 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Limch1Q3UH68 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Limch1Q3UH68 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
Limch1Q3UH68 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Limch1Q3UH68 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Limch1Q3UH68 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Limch1Q3UH68 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Limch1Q3UH68 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Limch1Q3UH68 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Limch1Q3UH68 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC20.22■□□□□ 0.83
Limch1Q3UH68 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC20.22■□□□□ 0.83
Limch1Q3UH68 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Limch1Q3UH68 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Limch1Q3UH68 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Limch1Q3UH68 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Limch1Q3UH68 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Limch1Q3UH68 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Limch1Q3UH68 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
Limch1Q3UH68 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Limch1Q3UH68 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Limch1Q3UH68 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
Limch1Q3UH68 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC20.22■□□□□ 0.83
Limch1Q3UH68 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Limch1Q3UH68 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Limch1Q3UH68 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Limch1Q3UH68 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Limch1Q3UH68 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Limch1Q3UH68 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Limch1Q3UH68 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Limch1Q3UH68 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Limch1Q3UH68 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Limch1Q3UH68 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Limch1Q3UH68 Gm8668-201ENSMUST00000120559 1447 ntBASIC20.21■□□□□ 0.83
Limch1Q3UH68 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Limch1Q3UH68 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Limch1Q3UH68 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC20.21■□□□□ 0.83
Limch1Q3UH68 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Limch1Q3UH68 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Limch1Q3UH68 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Limch1Q3UH68 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Limch1Q3UH68 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC20.21■□□□□ 0.83
Limch1Q3UH68 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Limch1Q3UH68 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Limch1Q3UH68 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Limch1Q3UH68 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Limch1Q3UH68 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Limch1Q3UH68 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
Limch1Q3UH68 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Limch1Q3UH68 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
Limch1Q3UH68 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Limch1Q3UH68 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC20.2■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms