Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Ddb1Q3U1J4 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
Ddb1Q3U1J4 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Ddb1Q3U1J4 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC21.86■■□□□ 1.09
Ddb1Q3U1J4 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Ddb1Q3U1J4 Rprl3-201ENSMUST00000157400 290 ntBASIC21.86■■□□□ 1.09
Ddb1Q3U1J4 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Ddb1Q3U1J4 AC160338.1-201ENSMUST00000214232 705 ntBASIC21.86■■□□□ 1.09
Ddb1Q3U1J4 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC21.86■■□□□ 1.09
Ddb1Q3U1J4 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
Ddb1Q3U1J4 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Ddb1Q3U1J4 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
Ddb1Q3U1J4 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Ddb1Q3U1J4 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
Ddb1Q3U1J4 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Ddb1Q3U1J4 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC21.85■■□□□ 1.09
Ddb1Q3U1J4 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
Ddb1Q3U1J4 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC21.85■■□□□ 1.09
Ddb1Q3U1J4 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC21.85■■□□□ 1.09
Ddb1Q3U1J4 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC21.85■■□□□ 1.09
Ddb1Q3U1J4 Gm2213-201ENSMUST00000197485 688 ntBASIC21.85■■□□□ 1.09
Ddb1Q3U1J4 Gm43332-201ENSMUST00000202511 1044 ntBASIC21.85■■□□□ 1.09
Ddb1Q3U1J4 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Ddb1Q3U1J4 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Ddb1Q3U1J4 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Ddb1Q3U1J4 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
Ddb1Q3U1J4 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Ddb1Q3U1J4 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Ddb1Q3U1J4 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Ddb1Q3U1J4 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Ddb1Q3U1J4 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC21.84■■□□□ 1.09
Ddb1Q3U1J4 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC21.84■■□□□ 1.09
Ddb1Q3U1J4 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Ddb1Q3U1J4 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Ddb1Q3U1J4 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC21.84■■□□□ 1.09
Ddb1Q3U1J4 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Ddb1Q3U1J4 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC21.83■■□□□ 1.09
Ddb1Q3U1J4 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC21.83■■□□□ 1.09
Ddb1Q3U1J4 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Ddb1Q3U1J4 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Ddb1Q3U1J4 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Ddb1Q3U1J4 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
Ddb1Q3U1J4 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC21.83■■□□□ 1.09
Ddb1Q3U1J4 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC21.83■■□□□ 1.09
Ddb1Q3U1J4 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC21.83■■□□□ 1.09
Ddb1Q3U1J4 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC21.83■■□□□ 1.09
Ddb1Q3U1J4 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Ddb1Q3U1J4 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Ddb1Q3U1J4 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC21.83■■□□□ 1.08
Ddb1Q3U1J4 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Ddb1Q3U1J4 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Ddb1Q3U1J4 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC21.82■■□□□ 1.08
Ddb1Q3U1J4 Fst-202ENSMUST00000223640 2612 ntBASIC21.82■■□□□ 1.08
Ddb1Q3U1J4 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Ddb1Q3U1J4 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
Ddb1Q3U1J4 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Ddb1Q3U1J4 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC21.82■■□□□ 1.08
Ddb1Q3U1J4 Gm13312-201ENSMUST00000119631 718 ntBASIC21.82■■□□□ 1.08
Ddb1Q3U1J4 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC21.82■■□□□ 1.08
Ddb1Q3U1J4 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC21.82■■□□□ 1.08
Ddb1Q3U1J4 Gm44357-201ENSMUST00000195897 142 ntBASIC21.82■■□□□ 1.08
Ddb1Q3U1J4 Gm19658-201ENSMUST00000196231 138 ntBASIC21.82■■□□□ 1.08
Ddb1Q3U1J4 Gm44367-201ENSMUST00000196836 138 ntBASIC21.82■■□□□ 1.08
Ddb1Q3U1J4 Gm44350-201ENSMUST00000197197 138 ntBASIC21.82■■□□□ 1.08
Ddb1Q3U1J4 Gm44390-201ENSMUST00000197533 144 ntBASIC21.82■■□□□ 1.08
Ddb1Q3U1J4 Gm44313-201ENSMUST00000198018 138 ntBASIC21.82■■□□□ 1.08
Ddb1Q3U1J4 Gm44486-201ENSMUST00000198508 138 ntBASIC21.82■■□□□ 1.08
Ddb1Q3U1J4 Gm44454-201ENSMUST00000198541 138 ntBASIC21.82■■□□□ 1.08
Ddb1Q3U1J4 Gm44314-201ENSMUST00000199263 138 ntBASIC21.82■■□□□ 1.08
Ddb1Q3U1J4 Gm44394-201ENSMUST00000199558 138 ntBASIC21.82■■□□□ 1.08
Ddb1Q3U1J4 Gm44484-201ENSMUST00000199873 138 ntBASIC21.82■■□□□ 1.08
Ddb1Q3U1J4 Gm44466-201ENSMUST00000200264 138 ntBASIC21.82■■□□□ 1.08
Ddb1Q3U1J4 Gm44359-201ENSMUST00000200671 138 ntBASIC21.82■■□□□ 1.08
Ddb1Q3U1J4 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC21.82■■□□□ 1.08
Ddb1Q3U1J4 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Ddb1Q3U1J4 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Ddb1Q3U1J4 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Ddb1Q3U1J4 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC21.82■■□□□ 1.08
Ddb1Q3U1J4 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Ddb1Q3U1J4 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Ddb1Q3U1J4 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC21.81■■□□□ 1.08
Ddb1Q3U1J4 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Ddb1Q3U1J4 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Ddb1Q3U1J4 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC21.81■■□□□ 1.08
Ddb1Q3U1J4 Gm12350-201ENSMUST00000121208 462 ntBASIC21.81■■□□□ 1.08
Ddb1Q3U1J4 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Ddb1Q3U1J4 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Ddb1Q3U1J4 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Ddb1Q3U1J4 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Ddb1Q3U1J4 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Ddb1Q3U1J4 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
Ddb1Q3U1J4 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Ddb1Q3U1J4 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Ddb1Q3U1J4 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Ddb1Q3U1J4 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
Ddb1Q3U1J4 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Ddb1Q3U1J4 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC21.8■■□□□ 1.08
Ddb1Q3U1J4 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC21.8■■□□□ 1.08
Ddb1Q3U1J4 Gm10060-201ENSMUST00000212002 111 ntBASIC21.8■■□□□ 1.08
Ddb1Q3U1J4 Gm5364-201ENSMUST00000216789 889 ntBASIC21.8■■□□□ 1.08
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms