Protein–RNA interactions for Protein: P97313

Prkdc, DNA-dependent protein kinase catalytic subunit, mousemouse

Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PrkdcP97313 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
PrkdcP97313 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
PrkdcP97313 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
PrkdcP97313 Gm11336-201ENSMUST00000118168 334 ntBASIC11.82□□□□□ -0.52
PrkdcP97313 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
PrkdcP97313 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
PrkdcP97313 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
PrkdcP97313 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
PrkdcP97313 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
PrkdcP97313 Gm38342-201ENSMUST00000195710 2980 ntBASIC11.82□□□□□ -0.52
PrkdcP97313 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
PrkdcP97313 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
PrkdcP97313 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC11.81□□□□□ -0.52
PrkdcP97313 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
PrkdcP97313 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
PrkdcP97313 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
PrkdcP97313 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
PrkdcP97313 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
PrkdcP97313 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
PrkdcP97313 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
PrkdcP97313 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PrkdcP97313 Mir3113-201ENSMUST00000175478 76 ntBASIC11.8□□□□□ -0.52
PrkdcP97313 Gm37171-201ENSMUST00000192636 1185 ntBASIC11.8□□□□□ -0.52
PrkdcP97313 Gm7229-201ENSMUST00000214719 1007 ntBASIC11.8□□□□□ -0.52
PrkdcP97313 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
PrkdcP97313 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PrkdcP97313 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PrkdcP97313 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PrkdcP97313 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
PrkdcP97313 Gm27000-201ENSMUST00000182943 842 ntBASIC11.8□□□□□ -0.52
PrkdcP97313 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
PrkdcP97313 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC11.8□□□□□ -0.52
PrkdcP97313 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PrkdcP97313 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PrkdcP97313 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PrkdcP97313 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
PrkdcP97313 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC11.8□□□□□ -0.52
PrkdcP97313 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
PrkdcP97313 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC11.8□□□□□ -0.52
PrkdcP97313 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PrkdcP97313 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC11.8□□□□□ -0.52
PrkdcP97313 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
PrkdcP97313 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
PrkdcP97313 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PrkdcP97313 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PrkdcP97313 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC11.79□□□□□ -0.52
PrkdcP97313 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PrkdcP97313 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PrkdcP97313 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PrkdcP97313 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC11.79□□□□□ -0.52
PrkdcP97313 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PrkdcP97313 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
PrkdcP97313 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
PrkdcP97313 Gm13616-201ENSMUST00000120600 222 ntBASIC11.79□□□□□ -0.52
PrkdcP97313 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC11.79□□□□□ -0.52
PrkdcP97313 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC11.79□□□□□ -0.52
PrkdcP97313 AC140375.2-201ENSMUST00000225283 584 ntBASIC11.79□□□□□ -0.52
PrkdcP97313 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PrkdcP97313 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PrkdcP97313 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
PrkdcP97313 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
PrkdcP97313 Gm6550-201ENSMUST00000187574 993 ntBASIC11.79□□□□□ -0.52
PrkdcP97313 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC11.79□□□□□ -0.52
PrkdcP97313 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PrkdcP97313 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
PrkdcP97313 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
PrkdcP97313 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC11.79□□□□□ -0.52
PrkdcP97313 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC11.79□□□□□ -0.52
PrkdcP97313 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
PrkdcP97313 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PrkdcP97313 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PrkdcP97313 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PrkdcP97313 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
PrkdcP97313 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
PrkdcP97313 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
PrkdcP97313 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC11.78□□□□□ -0.52
PrkdcP97313 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC11.78□□□□□ -0.52
PrkdcP97313 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
PrkdcP97313 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
PrkdcP97313 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
PrkdcP97313 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
PrkdcP97313 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
PrkdcP97313 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC11.78□□□□□ -0.52
PrkdcP97313 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
PrkdcP97313 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
PrkdcP97313 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
PrkdcP97313 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC11.78□□□□□ -0.52
PrkdcP97313 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
PrkdcP97313 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC11.78□□□□□ -0.52
PrkdcP97313 Gm43767-201ENSMUST00000198933 381 ntBASIC11.78□□□□□ -0.52
PrkdcP97313 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC11.78□□□□□ -0.52
PrkdcP97313 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC11.78□□□□□ -0.52
PrkdcP97313 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
PrkdcP97313 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
PrkdcP97313 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
PrkdcP97313 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC11.78□□□□□ -0.52
PrkdcP97313 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
PrkdcP97313 AV026068-213ENSMUST00000223675 1171 ntBASIC11.78□□□□□ -0.52
PrkdcP97313 Gm15500-202ENSMUST00000071641 1019 ntBASIC11.78□□□□□ -0.52
PrkdcP97313 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms