Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Ercc3P49135 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC20.39■□□□□ 0.85
Ercc3P49135 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC20.39■□□□□ 0.85
Ercc3P49135 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC20.39■□□□□ 0.85
Ercc3P49135 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC20.39■□□□□ 0.85
Ercc3P49135 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Ercc3P49135 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Ercc3P49135 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Ercc3P49135 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Ercc3P49135 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
Ercc3P49135 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Ercc3P49135 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Ercc3P49135 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Ercc3P49135 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Ercc3P49135 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Ercc3P49135 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
Ercc3P49135 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Ercc3P49135 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Ercc3P49135 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Ercc3P49135 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Ercc3P49135 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC20.38■□□□□ 0.85
Ercc3P49135 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Ercc3P49135 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Ercc3P49135 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Ercc3P49135 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC20.38■□□□□ 0.85
Ercc3P49135 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Ercc3P49135 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Ercc3P49135 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Ercc3P49135 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC20.38■□□□□ 0.85
Ercc3P49135 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Ercc3P49135 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC20.38■□□□□ 0.85
Ercc3P49135 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Ercc3P49135 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Ercc3P49135 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Ercc3P49135 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Ercc3P49135 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC20.37■□□□□ 0.85
Ercc3P49135 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Ercc3P49135 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
Ercc3P49135 Gm7791-201ENSMUST00000219066 539 ntBASIC20.37■□□□□ 0.85
Ercc3P49135 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Ercc3P49135 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
Ercc3P49135 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC20.37■□□□□ 0.85
Ercc3P49135 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Ercc3P49135 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
Ercc3P49135 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC20.37■□□□□ 0.85
Ercc3P49135 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Ercc3P49135 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Ercc3P49135 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Ercc3P49135 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC20.36■□□□□ 0.85
Ercc3P49135 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
Ercc3P49135 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Ercc3P49135 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Ercc3P49135 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Ercc3P49135 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Ercc3P49135 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC20.36■□□□□ 0.85
Ercc3P49135 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
Ercc3P49135 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Ercc3P49135 Gm43353-201ENSMUST00000199224 1295 ntBASIC20.36■□□□□ 0.85
Ercc3P49135 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC20.36■□□□□ 0.85
Ercc3P49135 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Ercc3P49135 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Ercc3P49135 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Ercc3P49135 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ercc3P49135 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ercc3P49135 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ercc3P49135 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Ercc3P49135 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ercc3P49135 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC20.35■□□□□ 0.85
Ercc3P49135 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ercc3P49135 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ercc3P49135 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC20.35■□□□□ 0.85
Ercc3P49135 Gm13559-201ENSMUST00000120476 863 ntBASIC20.35■□□□□ 0.85
Ercc3P49135 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
Ercc3P49135 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Ercc3P49135 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ercc3P49135 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC20.35■□□□□ 0.85
Ercc3P49135 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
Ercc3P49135 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
Ercc3P49135 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ercc3P49135 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ercc3P49135 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ercc3P49135 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ercc3P49135 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC20.35■□□□□ 0.85
Ercc3P49135 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ercc3P49135 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Ercc3P49135 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC20.35■□□□□ 0.85
Ercc3P49135 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ercc3P49135 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Ercc3P49135 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ercc3P49135 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ercc3P49135 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
Ercc3P49135 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC20.34■□□□□ 0.85
Ercc3P49135 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ercc3P49135 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Ercc3P49135 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Ercc3P49135 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Ercc3P49135 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ercc3P49135 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ercc3P49135 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ercc3P49135 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms