Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Msh3P13705 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Msh3P13705 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Msh3P13705 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Msh3P13705 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Msh3P13705 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
Msh3P13705 Gm9484-201ENSMUST00000195892 1159 ntBASIC18.92■□□□□ 0.62
Msh3P13705 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC18.92■□□□□ 0.62
Msh3P13705 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Msh3P13705 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Msh3P13705 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Msh3P13705 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Msh3P13705 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Msh3P13705 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Msh3P13705 AL590614.2-201ENSMUST00000225374 1937 ntBASIC18.92■□□□□ 0.62
Msh3P13705 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Msh3P13705 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Msh3P13705 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Msh3P13705 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Msh3P13705 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Msh3P13705 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC18.91■□□□□ 0.62
Msh3P13705 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC18.91■□□□□ 0.62
Msh3P13705 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Msh3P13705 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Msh3P13705 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Msh3P13705 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Msh3P13705 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Msh3P13705 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Msh3P13705 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC18.9■□□□□ 0.62
Msh3P13705 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Msh3P13705 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Msh3P13705 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Msh3P13705 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC18.9■□□□□ 0.62
Msh3P13705 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC18.9■□□□□ 0.62
Msh3P13705 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC18.9■□□□□ 0.62
Msh3P13705 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
Msh3P13705 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Msh3P13705 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Msh3P13705 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Msh3P13705 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Msh3P13705 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Msh3P13705 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Msh3P13705 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Msh3P13705 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Msh3P13705 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Msh3P13705 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Msh3P13705 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Msh3P13705 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC18.89■□□□□ 0.61
Msh3P13705 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Msh3P13705 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Msh3P13705 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Msh3P13705 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Msh3P13705 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Msh3P13705 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Msh3P13705 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Msh3P13705 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Msh3P13705 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Msh3P13705 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC18.88■□□□□ 0.61
Msh3P13705 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Msh3P13705 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Msh3P13705 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC18.88■□□□□ 0.61
Msh3P13705 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Msh3P13705 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC18.88■□□□□ 0.61
Msh3P13705 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Msh3P13705 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Msh3P13705 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Msh3P13705 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Msh3P13705 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Msh3P13705 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Msh3P13705 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Msh3P13705 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Msh3P13705 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Msh3P13705 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Msh3P13705 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Msh3P13705 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Msh3P13705 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Msh3P13705 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Msh3P13705 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Msh3P13705 AC135963.1-201ENSMUST00000211640 717 ntBASIC18.87■□□□□ 0.61
Msh3P13705 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC18.87■□□□□ 0.61
Msh3P13705 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Msh3P13705 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC18.87■□□□□ 0.61
Msh3P13705 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Msh3P13705 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Msh3P13705 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Msh3P13705 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Msh3P13705 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Msh3P13705 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Msh3P13705 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Msh3P13705 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Msh3P13705 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Msh3P13705 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Msh3P13705 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC18.87■□□□□ 0.61
Msh3P13705 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Msh3P13705 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Msh3P13705 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Msh3P13705 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Msh3P13705 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Msh3P13705 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
Msh3P13705 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms