Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
Col1a1P11087 Gm7935-201ENSMUST00000100555 1278 ntBASIC20.14■□□□□ 0.81
Col1a1P11087 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC20.14■□□□□ 0.81
Col1a1P11087 Gm2651-201ENSMUST00000203560 838 ntBASIC20.14■□□□□ 0.81
Col1a1P11087 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Col1a1P11087 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC20.14■□□□□ 0.81
Col1a1P11087 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Col1a1P11087 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
Col1a1P11087 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC20.14■□□□□ 0.81
Col1a1P11087 AC123834.2-201ENSMUST00000224038 2340 ntBASIC20.14■□□□□ 0.81
Col1a1P11087 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Col1a1P11087 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
Col1a1P11087 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Col1a1P11087 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col1a1P11087 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC20.13■□□□□ 0.81
Col1a1P11087 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col1a1P11087 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC20.13■□□□□ 0.81
Col1a1P11087 Gm27525-201ENSMUST00000184465 107 ntBASIC20.13■□□□□ 0.81
Col1a1P11087 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col1a1P11087 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Col1a1P11087 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Col1a1P11087 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col1a1P11087 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Col1a1P11087 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC20.12■□□□□ 0.81
Col1a1P11087 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Col1a1P11087 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC20.12■□□□□ 0.81
Col1a1P11087 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
Col1a1P11087 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col1a1P11087 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC20.12■□□□□ 0.81
Col1a1P11087 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Col1a1P11087 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Col1a1P11087 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC20.12■□□□□ 0.81
Col1a1P11087 AC108846.1-201ENSMUST00000214531 513 ntBASIC20.12■□□□□ 0.81
Col1a1P11087 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col1a1P11087 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col1a1P11087 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Col1a1P11087 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
Col1a1P11087 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col1a1P11087 Gm6190-201ENSMUST00000220683 1374 ntBASIC20.12■□□□□ 0.81
Col1a1P11087 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col1a1P11087 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Col1a1P11087 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC20.12■□□□□ 0.81
Col1a1P11087 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Col1a1P11087 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Col1a1P11087 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Col1a1P11087 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Col1a1P11087 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col1a1P11087 AC124392.1-201ENSMUST00000225172 5324 ntBASIC20.12■□□□□ 0.81
Col1a1P11087 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Col1a1P11087 Rprl3-201ENSMUST00000157400 290 ntBASIC20.11■□□□□ 0.81
Col1a1P11087 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Col1a1P11087 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC20.11■□□□□ 0.81
Col1a1P11087 AC132104.2-201ENSMUST00000215011 266 ntBASIC20.11■□□□□ 0.81
Col1a1P11087 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col1a1P11087 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col1a1P11087 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Col1a1P11087 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col1a1P11087 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Col1a1P11087 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col1a1P11087 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col1a1P11087 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col1a1P11087 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col1a1P11087 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC20.11■□□□□ 0.81
Col1a1P11087 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col1a1P11087 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col1a1P11087 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Col1a1P11087 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC20.11■□□□□ 0.81
Col1a1P11087 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC20.11■□□□□ 0.81
Col1a1P11087 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC20.11■□□□□ 0.81
Col1a1P11087 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Col1a1P11087 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col1a1P11087 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Col1a1P11087 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col1a1P11087 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col1a1P11087 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col1a1P11087 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col1a1P11087 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col1a1P11087 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Col1a1P11087 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Col1a1P11087 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col1a1P11087 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col1a1P11087 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC20.1■□□□□ 0.81
Col1a1P11087 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Col1a1P11087 Phf7-203ENSMUST00000226565 1971 ntBASIC20.09■□□□□ 0.81
Col1a1P11087 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col1a1P11087 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Col1a1P11087 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Col1a1P11087 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col1a1P11087 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC20.09■□□□□ 0.81
Col1a1P11087 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC20.09■□□□□ 0.81
Col1a1P11087 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC20.09■□□□□ 0.81
Col1a1P11087 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Col1a1P11087 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC20.09■□□□□ 0.81
Col1a1P11087 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col1a1P11087 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col1a1P11087 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col1a1P11087 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col1a1P11087 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Col1a1P11087 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
Col1a1P11087 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 18.6 ms