Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Chmp6P0C0A3 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Chmp6P0C0A3 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Chmp6P0C0A3 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Chmp6P0C0A3 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Chmp6P0C0A3 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Chmp6P0C0A3 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Chmp6P0C0A3 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Chmp6P0C0A3 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Chmp6P0C0A3 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Chmp6P0C0A3 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
Chmp6P0C0A3 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Chmp6P0C0A3 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Chmp6P0C0A3 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Chmp6P0C0A3 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Chmp6P0C0A3 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Chmp6P0C0A3 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
Chmp6P0C0A3 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Chmp6P0C0A3 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Chmp6P0C0A3 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Chmp6P0C0A3 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Chmp6P0C0A3 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Chmp6P0C0A3 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC18.72■□□□□ 0.59
Chmp6P0C0A3 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC18.72■□□□□ 0.59
Chmp6P0C0A3 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC18.72■□□□□ 0.59
Chmp6P0C0A3 Gm10517-202ENSMUST00000192970 758 ntBASIC18.72■□□□□ 0.59
Chmp6P0C0A3 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Chmp6P0C0A3 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Chmp6P0C0A3 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Chmp6P0C0A3 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Chmp6P0C0A3 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Chmp6P0C0A3 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Chmp6P0C0A3 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Chmp6P0C0A3 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Chmp6P0C0A3 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Chmp6P0C0A3 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Chmp6P0C0A3 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Chmp6P0C0A3 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Chmp6P0C0A3 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Chmp6P0C0A3 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Chmp6P0C0A3 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Chmp6P0C0A3 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Chmp6P0C0A3 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Chmp6P0C0A3 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Chmp6P0C0A3 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC18.71■□□□□ 0.59
Chmp6P0C0A3 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Chmp6P0C0A3 AC175538.1-201ENSMUST00000225343 1269 ntBASIC18.71■□□□□ 0.59
Chmp6P0C0A3 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
Chmp6P0C0A3 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Chmp6P0C0A3 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC18.71■□□□□ 0.59
Chmp6P0C0A3 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Chmp6P0C0A3 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Chmp6P0C0A3 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Chmp6P0C0A3 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Chmp6P0C0A3 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Chmp6P0C0A3 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Chmp6P0C0A3 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC18.7■□□□□ 0.58
Chmp6P0C0A3 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Chmp6P0C0A3 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC18.7■□□□□ 0.58
Chmp6P0C0A3 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Chmp6P0C0A3 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Chmp6P0C0A3 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Chmp6P0C0A3 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC18.7■□□□□ 0.58
Chmp6P0C0A3 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC18.7■□□□□ 0.58
Chmp6P0C0A3 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Chmp6P0C0A3 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
Chmp6P0C0A3 Gm9694-201ENSMUST00000193347 1189 ntBASIC18.7■□□□□ 0.58
Chmp6P0C0A3 AL672049.1-201ENSMUST00000197943 91 ntBASIC18.7■□□□□ 0.58
Chmp6P0C0A3 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC18.7■□□□□ 0.58
Chmp6P0C0A3 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Chmp6P0C0A3 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Chmp6P0C0A3 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Chmp6P0C0A3 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Chmp6P0C0A3 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Chmp6P0C0A3 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
Chmp6P0C0A3 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Chmp6P0C0A3 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Chmp6P0C0A3 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Chmp6P0C0A3 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Chmp6P0C0A3 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Chmp6P0C0A3 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
Chmp6P0C0A3 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
Chmp6P0C0A3 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
Chmp6P0C0A3 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC18.69■□□□□ 0.58
Chmp6P0C0A3 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Chmp6P0C0A3 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Chmp6P0C0A3 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Chmp6P0C0A3 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Chmp6P0C0A3 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC18.69■□□□□ 0.58
Chmp6P0C0A3 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Chmp6P0C0A3 Gm7712-202ENSMUST00000222331 1510 ntBASIC18.69■□□□□ 0.58
Chmp6P0C0A3 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC18.69■□□□□ 0.58
Chmp6P0C0A3 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Chmp6P0C0A3 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Chmp6P0C0A3 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Chmp6P0C0A3 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Chmp6P0C0A3 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Chmp6P0C0A3 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Chmp6P0C0A3 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Chmp6P0C0A3 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms