Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 A530053G22Rik-201ENSMUST00000060147 1526 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
ShhQ62226 Elavl2-208ENSMUST00000107120 4191 ntTSL 5 BASIC3.73□□□□□ -1.81
ShhQ62226 Hdx-201ENSMUST00000038472 9385 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
ShhQ62226 Olfr992-203ENSMUST00000214895 2222 ntAPPRIS P1 TSL 3 BASIC3.72□□□□□ -1.81
ShhQ62226 Olfr194-203ENSMUST00000216519 3705 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
ShhQ62226 Gm14415-201ENSMUST00000118260 1578 ntBASIC3.72□□□□□ -1.81
ShhQ62226 Gm43824-201ENSMUST00000199042 2588 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
ShhQ62226 Zfp992-201ENSMUST00000105733 4550 ntAPPRIS P1 TSL 3 BASIC3.72□□□□□ -1.81
ShhQ62226 AC124346.2-201ENSMUST00000217986 5083 ntBASIC3.72□□□□□ -1.81
ShhQ62226 Lrrtm2-201ENSMUST00000091636 5665 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
ShhQ62226 AL589737.1-201ENSMUST00000221163 2763 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
ShhQ62226 Olfr1323-203ENSMUST00000213556 5431 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
ShhQ62226 Gm25272-201ENSMUST00000104293 128 ntBASIC3.72□□□□□ -1.81
ShhQ62226 Cyp4b1-ps2-201ENSMUST00000119563 333 ntBASIC3.72□□□□□ -1.81
ShhQ62226 Gm14559-201ENSMUST00000121745 496 ntBASIC3.72□□□□□ -1.81
ShhQ62226 Gm15870-201ENSMUST00000132657 644 ntTSL 3 BASIC3.72□□□□□ -1.81
ShhQ62226 Gm13266-201ENSMUST00000141869 579 ntTSL 2 BASIC3.72□□□□□ -1.81
ShhQ62226 Gm22314-201ENSMUST00000158007 281 ntBASIC3.72□□□□□ -1.81
ShhQ62226 Gm16353-201ENSMUST00000159458 1223 ntBASIC3.72□□□□□ -1.81
ShhQ62226 Gm21737-201ENSMUST00000178112 664 ntBASIC3.72□□□□□ -1.81
ShhQ62226 Gm20874-201ENSMUST00000178356 663 ntBASIC3.72□□□□□ -1.81
ShhQ62226 Gm21744-201ENSMUST00000178403 662 ntBASIC3.72□□□□□ -1.81
ShhQ62226 Gm26335-201ENSMUST00000178449 107 ntBASIC3.72□□□□□ -1.81
ShhQ62226 Gm4479-201ENSMUST00000178807 171 ntBASIC3.72□□□□□ -1.81
ShhQ62226 Gm25156-201ENSMUST00000179809 79 ntBASIC3.72□□□□□ -1.81
ShhQ62226 Gm20901-201ENSMUST00000180177 664 ntBASIC3.72□□□□□ -1.81
ShhQ62226 Gm28090-201ENSMUST00000189458 664 ntBASIC3.72□□□□□ -1.81
ShhQ62226 Gm21647-201ENSMUST00000189755 664 ntBASIC3.72□□□□□ -1.81
ShhQ62226 Ranbp2-ps11-201ENSMUST00000197185 387 ntBASIC3.72□□□□□ -1.81
ShhQ62226 Gm19089-201ENSMUST00000197207 613 ntBASIC3.72□□□□□ -1.81
ShhQ62226 Gm42924-201ENSMUST00000197261 185 ntBASIC3.72□□□□□ -1.81
ShhQ62226 Gm44720-201ENSMUST00000206076 260 ntBASIC3.72□□□□□ -1.81
ShhQ62226 Olfr1482-ps1-201ENSMUST00000207181 178 ntBASIC3.72□□□□□ -1.81
ShhQ62226 Gm19126-201ENSMUST00000207896 509 ntBASIC3.72□□□□□ -1.81
ShhQ62226 AC116656.1-201ENSMUST00000227040 755 ntBASIC3.72□□□□□ -1.81
ShhQ62226 AC120553.1-201ENSMUST00000227313 260 ntBASIC3.72□□□□□ -1.81
ShhQ62226 Olfr308-201ENSMUST00000044256 1056 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
ShhQ62226 Vmn1r26-201ENSMUST00000049694 1020 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
ShhQ62226 Gm9845-201ENSMUST00000056409 598 ntBASIC3.72□□□□□ -1.81
ShhQ62226 9530051G07Rik-201ENSMUST00000127673 4414 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
ShhQ62226 Vmn1r82-201ENSMUST00000072801 4784 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
ShhQ62226 4932429P05Rik-201ENSMUST00000113958 3093 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
ShhQ62226 Gm45304-201ENSMUST00000210303 2828 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
ShhQ62226 Olfr418-202ENSMUST00000213420 4388 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
ShhQ62226 Senp8-203ENSMUST00000177963 3792 ntAPPRIS P3 TSL 1 (best) BASIC3.72□□□□□ -1.81
ShhQ62226 Gm5570-202ENSMUST00000101355 2527 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
ShhQ62226 Pde1a-206ENSMUST00000102655 4258 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
ShhQ62226 Olfr782-202ENSMUST00000213970 1944 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
ShhQ62226 Foxr2-202ENSMUST00000163801 3072 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
ShhQ62226 Gm44679-201ENSMUST00000207202 2908 ntBASIC3.71□□□□□ -1.81
ShhQ62226 Nbeal1-203ENSMUST00000160834 15731 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
ShhQ62226 Gm34549-201ENSMUST00000207057 1611 ntTSL 5 BASIC3.71□□□□□ -1.82
ShhQ62226 Gm37802-201ENSMUST00000194998 2643 ntBASIC3.71□□□□□ -1.82
ShhQ62226 Gm22590-201ENSMUST00000104247 128 ntBASIC3.71□□□□□ -1.82
ShhQ62226 Gm25376-201ENSMUST00000104340 133 ntBASIC3.71□□□□□ -1.82
ShhQ62226 Gm11367-201ENSMUST00000117802 120 ntBASIC3.71□□□□□ -1.82
ShhQ62226 Hmgb1-ps4-201ENSMUST00000118281 635 ntBASIC3.71□□□□□ -1.82
ShhQ62226 Gm11429-201ENSMUST00000119089 144 ntBASIC3.71□□□□□ -1.82
ShhQ62226 Gm15313-201ENSMUST00000119179 282 ntBASIC3.71□□□□□ -1.82
ShhQ62226 Gm14049-201ENSMUST00000121009 636 ntBASIC3.71□□□□□ -1.82
ShhQ62226 Gm15848-202ENSMUST00000125056 832 ntTSL 3 BASIC3.71□□□□□ -1.82
ShhQ62226 Gm13307-201ENSMUST00000141375 493 ntTSL 5 BASIC3.71□□□□□ -1.82
ShhQ62226 Gm22769-201ENSMUST00000158367 98 ntBASIC3.71□□□□□ -1.82
ShhQ62226 Vmn1r-ps9-201ENSMUST00000177047 358 ntBASIC3.71□□□□□ -1.82
ShhQ62226 Gm21815-201ENSMUST00000178213 664 ntBASIC3.71□□□□□ -1.82
ShhQ62226 Gm4076-201ENSMUST00000179230 965 ntBASIC3.71□□□□□ -1.82
ShhQ62226 Gm26870-201ENSMUST00000181242 1170 ntTSL 5 BASIC3.71□□□□□ -1.82
ShhQ62226 Gm27588-201ENSMUST00000185096 263 ntBASIC3.71□□□□□ -1.82
ShhQ62226 1810022K09Rik-203ENSMUST00000185423 278 ntTSL 3 BASIC3.71□□□□□ -1.82
ShhQ62226 Gm28098-201ENSMUST00000191361 699 ntBASIC3.71□□□□□ -1.82
ShhQ62226 Gm43855-201ENSMUST00000197462 507 ntBASIC3.71□□□□□ -1.82
ShhQ62226 Gm42812-201ENSMUST00000199844 337 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
ShhQ62226 Gm43028-201ENSMUST00000202561 481 ntBASIC3.71□□□□□ -1.82
ShhQ62226 Gm43449-201ENSMUST00000202955 371 ntTSL 3 BASIC3.71□□□□□ -1.82
ShhQ62226 Gm44808-201ENSMUST00000208887 264 ntTSL 5 BASIC3.71□□□□□ -1.82
ShhQ62226 AC157494.1-201ENSMUST00000221127 549 ntTSL 5 BASIC3.71□□□□□ -1.82
ShhQ62226 AC153662.1-201ENSMUST00000222220 270 ntBASIC3.71□□□□□ -1.82
ShhQ62226 AC173481.1-201ENSMUST00000223351 270 ntBASIC3.71□□□□□ -1.82
ShhQ62226 AC134254.5-201ENSMUST00000223436 400 ntBASIC3.71□□□□□ -1.82
ShhQ62226 AC133598.4-202ENSMUST00000225267 469 ntBASIC3.71□□□□□ -1.82
ShhQ62226 AC115291.2-201ENSMUST00000228335 437 ntBASIC3.71□□□□□ -1.82
ShhQ62226 Gm23736-201ENSMUST00000082553 75 ntBASIC3.71□□□□□ -1.82
ShhQ62226 Gm23443-201ENSMUST00000082916 128 ntBASIC3.71□□□□□ -1.82
ShhQ62226 Gm24043-201ENSMUST00000083108 116 ntBASIC3.71□□□□□ -1.82
ShhQ62226 Gm17976-201ENSMUST00000184037 1909 ntBASIC3.71□□□□□ -1.82
ShhQ62226 Gm5347-201ENSMUST00000210542 2327 ntBASIC3.71□□□□□ -1.82
ShhQ62226 Nlrp4f-201ENSMUST00000037372 3527 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
ShhQ62226 Gm14636-202ENSMUST00000150801 5060 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
ShhQ62226 Gm43924-201ENSMUST00000204851 1736 ntBASIC3.7□□□□□ -1.82
ShhQ62226 Olfr1150-ps1-201ENSMUST00000121186 3311 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
ShhQ62226 Gm22115-201ENSMUST00000103976 133 ntBASIC3.7□□□□□ -1.82
ShhQ62226 Gm23923-201ENSMUST00000104108 133 ntBASIC3.7□□□□□ -1.82
ShhQ62226 Gm24067-201ENSMUST00000104514 85 ntBASIC3.7□□□□□ -1.82
ShhQ62226 Gm10972-201ENSMUST00000107276 81 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
ShhQ62226 Gm14197-201ENSMUST00000117480 1049 ntBASIC3.7□□□□□ -1.82
ShhQ62226 Gm15268-201ENSMUST00000118845 352 ntBASIC3.7□□□□□ -1.82
ShhQ62226 Gm13273-201ENSMUST00000119737 159 ntBASIC3.7□□□□□ -1.82
ShhQ62226 Gm14008-201ENSMUST00000120483 274 ntBASIC3.7□□□□□ -1.82
ShhQ62226 Gm11430-201ENSMUST00000121317 217 ntBASIC3.7□□□□□ -1.82
ShhQ62226 Gm4916-201ENSMUST00000126139 642 ntBASIC3.7□□□□□ -1.82
Retrieved 100 of 76,532 protein–RNA pairs in 91.1 ms