Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Vmn1r-ps56-201ENSMUST00000172769 965 ntBASIC2.59□□□□□ -1.99
Sdc1P18828 Gm25960-201ENSMUST00000175110 125 ntBASIC2.59□□□□□ -1.99
Sdc1P18828 Gm25999-201ENSMUST00000175398 133 ntBASIC2.59□□□□□ -1.99
Sdc1P18828 Mir713-201ENSMUST00000178651 108 ntBASIC2.59□□□□□ -1.99
Sdc1P18828 Gm28628-201ENSMUST00000187006 264 ntBASIC2.59□□□□□ -1.99
Sdc1P18828 Gm28629-201ENSMUST00000187309 263 ntBASIC2.59□□□□□ -1.99
Sdc1P18828 Gm7142-201ENSMUST00000194232 586 ntBASIC2.59□□□□□ -1.99
Sdc1P18828 Gm43104-201ENSMUST00000197234 311 ntBASIC2.59□□□□□ -1.99
Sdc1P18828 Gm31693-201ENSMUST00000200150 909 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
Sdc1P18828 Lyrm1-209ENSMUST00000208424 888 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
Sdc1P18828 4930470O06Rik-201ENSMUST00000209438 662 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
Sdc1P18828 Gm45434-201ENSMUST00000210550 293 ntBASIC2.59□□□□□ -1.99
Sdc1P18828 Gm45430-201ENSMUST00000211276 260 ntTSL 5 BASIC2.59□□□□□ -1.99
Sdc1P18828 AC152415.1-201ENSMUST00000213320 440 ntBASIC2.59□□□□□ -1.99
Sdc1P18828 AC157017.2-201ENSMUST00000218354 777 ntBASIC2.59□□□□□ -1.99
Sdc1P18828 AC158395.1-201ENSMUST00000227206 452 ntBASIC2.59□□□□□ -1.99
Sdc1P18828 Acrv1-201ENSMUST00000034620 1101 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
Sdc1P18828 Tas2r136-201ENSMUST00000065532 984 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
Sdc1P18828 Gm10115-201ENSMUST00000076071 1228 ntBASIC2.59□□□□□ -1.99
Sdc1P18828 Olfr295-201ENSMUST00000078447 930 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
Sdc1P18828 Gm26437-201ENSMUST00000082595 105 ntBASIC2.59□□□□□ -1.99
Sdc1P18828 Gm23932-201ENSMUST00000082914 107 ntBASIC2.59□□□□□ -1.99
Sdc1P18828 Muc16-204ENSMUST00000208663 25437 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -1.99
Sdc1P18828 Gm5141-202ENSMUST00000201047 3279 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
Sdc1P18828 Hsf3-205ENSMUST00000179832 1972 ntTSL 1 (best) BASIC2.59□□□□□ -2
Sdc1P18828 Vmn2r66-201ENSMUST00000124773 2556 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
Sdc1P18828 Zfp979-201ENSMUST00000037565 2558 ntAPPRIS P1 TSL 2 BASIC2.58□□□□□ -2
Sdc1P18828 Olfr1256-204ENSMUST00000215613 4543 ntAPPRIS P1 TSL 3 BASIC2.58□□□□□ -2
Sdc1P18828 A530053G22Rik-201ENSMUST00000060147 1526 ntTSL 1 (best) BASIC2.58□□□□□ -2
Sdc1P18828 Sucnr1-201ENSMUST00000029326 1571 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
Sdc1P18828 D030040B21Rik-201ENSMUST00000181371 2788 ntTSL 1 (best) BASIC2.58□□□□□ -2
Sdc1P18828 Gm44230-201ENSMUST00000203032 3550 ntBASIC2.58□□□□□ -2
Sdc1P18828 Mir761-201ENSMUST00000103245 76 ntBASIC2.58□□□□□ -2
Sdc1P18828 Gm24119-201ENSMUST00000103979 246 ntBASIC2.58□□□□□ -2
Sdc1P18828 Gm11077-201ENSMUST00000111844 84 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
Sdc1P18828 Gm23178-201ENSMUST00000116782 95 ntBASIC2.58□□□□□ -2
Sdc1P18828 Klrc1-203ENSMUST00000118447 684 ntAPPRIS P3 TSL 1 (best) BASIC2.58□□□□□ -2
Sdc1P18828 Gm12507-201ENSMUST00000119155 415 ntBASIC2.58□□□□□ -2
Sdc1P18828 Rab7b-203ENSMUST00000129905 476 ntTSL 2 BASIC2.58□□□□□ -2
Sdc1P18828 Gm12729-201ENSMUST00000130088 624 ntTSL 3 BASIC2.58□□□□□ -2
Sdc1P18828 1700061F12Rik-201ENSMUST00000132414 876 ntTSL 1 (best) BASIC2.58□□□□□ -2
Sdc1P18828 Gm16351-201ENSMUST00000142008 250 ntTSL 3 BASIC2.58□□□□□ -2
Sdc1P18828 Gm23754-201ENSMUST00000157576 63 ntBASIC2.58□□□□□ -2
Sdc1P18828 Gm24503-201ENSMUST00000158454 135 ntBASIC2.58□□□□□ -2
Sdc1P18828 Gm23773-201ENSMUST00000158985 296 ntBASIC2.58□□□□□ -2
Sdc1P18828 Gm16289-201ENSMUST00000162079 183 ntBASIC2.58□□□□□ -2
Sdc1P18828 Arpp19-211ENSMUST00000170310 899 ntTSL 3 BASIC2.58□□□□□ -2
Sdc1P18828 Gm6155-201ENSMUST00000173735 341 ntBASIC2.58□□□□□ -2
Sdc1P18828 Gm20701-201ENSMUST00000176082 347 ntBASIC2.58□□□□□ -2
Sdc1P18828 Gm26844-201ENSMUST00000181690 673 ntTSL 1 (best) BASIC2.58□□□□□ -2
Sdc1P18828 Obox4-ps3-201ENSMUST00000183474 520 ntBASIC2.58□□□□□ -2
Sdc1P18828 Gm27875-201ENSMUST00000184425 123 ntBASIC2.58□□□□□ -2
Sdc1P18828 Gm28935-201ENSMUST00000185737 568 ntTSL 2 BASIC2.58□□□□□ -2
Sdc1P18828 Gm19637-201ENSMUST00000185933 579 ntBASIC2.58□□□□□ -2
Sdc1P18828 Gm37989-201ENSMUST00000195202 803 ntBASIC2.58□□□□□ -2
Sdc1P18828 Gm18100-201ENSMUST00000200897 452 ntBASIC2.58□□□□□ -2
Sdc1P18828 Gm44058-201ENSMUST00000204335 467 ntBASIC2.58□□□□□ -2
Sdc1P18828 Vmn1r85-202ENSMUST00000209822 1251 ntAPPRIS P1 TSL 2 BASIC2.58□□□□□ -2
Sdc1P18828 Olfr566-202ENSMUST00000209952 1066 ntAPPRIS ALT1 TSL 3 BASIC2.58□□□□□ -2
Sdc1P18828 Gm33501-202ENSMUST00000209983 706 ntTSL 5 BASIC2.58□□□□□ -2
Sdc1P18828 AC127302.1-201ENSMUST00000215973 1111 ntBASIC2.58□□□□□ -2
Sdc1P18828 Vmn1r-ps50-201ENSMUST00000216908 453 ntBASIC2.58□□□□□ -2
Sdc1P18828 AC152979.1-201ENSMUST00000218214 289 ntBASIC2.58□□□□□ -2
Sdc1P18828 CT010455.1-201ENSMUST00000218579 413 ntBASIC2.58□□□□□ -2
Sdc1P18828 AC122418.1-201ENSMUST00000225012 511 ntBASIC2.58□□□□□ -2
Sdc1P18828 AC166369.3-201ENSMUST00000227286 409 ntBASIC2.58□□□□□ -2
Sdc1P18828 Olfr566-201ENSMUST00000071393 951 ntAPPRIS P2 BASIC2.58□□□□□ -2
Sdc1P18828 Gm26203-201ENSMUST00000082911 114 ntBASIC2.58□□□□□ -2
Sdc1P18828 Mir421-201ENSMUST00000083575 76 ntBASIC2.58□□□□□ -2
Sdc1P18828 Defb33-201ENSMUST00000098908 424 ntAPPRIS P1 TSL 2 BASIC2.58□□□□□ -2
Sdc1P18828 Gm10801-201ENSMUST00000099684 504 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
Sdc1P18828 Olfr196-202ENSMUST00000205471 1711 ntAPPRIS P1 TSL 3 BASIC2.58□□□□□ -2
Sdc1P18828 Gm42888-201ENSMUST00000202425 4361 ntBASIC2.58□□□□□ -2
Sdc1P18828 Olfr107-203ENSMUST00000215947 3954 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
Sdc1P18828 Tlr3-202ENSMUST00000167106 4093 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
Sdc1P18828 Zfp985-201ENSMUST00000081742 2762 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
Sdc1P18828 Mrgprx2-201ENSMUST00000098433 4610 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
Sdc1P18828 Gm43718-201ENSMUST00000197524 1857 ntBASIC2.58□□□□□ -2
Sdc1P18828 Vmn1r211-202ENSMUST00000228645 5447 ntAPPRIS P1 BASIC2.58□□□□□ -2
Sdc1P18828 Gm44120-201ENSMUST00000203022 3023 ntBASIC2.58□□□□□ -2
Sdc1P18828 Wnk3-201ENSMUST00000096285 8551 ntAPPRIS ALT2 TSL 5 BASIC2.58□□□□□ -2
Sdc1P18828 Nexn-211ENSMUST00000199423 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC2.58□□□□□ -2
Sdc1P18828 Olfr1447-203ENSMUST00000216989 2586 ntAPPRIS P1 TSL 5 BASIC2.57□□□□□ -2
Sdc1P18828 Fnd3c2-201ENSMUST00000091282 3662 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
Sdc1P18828 Gm40020-201ENSMUST00000215677 1635 ntBASIC2.57□□□□□ -2
Sdc1P18828 Lrrc19-201ENSMUST00000053419 2780 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
Sdc1P18828 C87977-201ENSMUST00000105753 2446 ntAPPRIS ALT2 TSL 1 (best) BASIC2.57□□□□□ -2
Sdc1P18828 Evi2b-201ENSMUST00000179322 1858 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
Sdc1P18828 Gm22658-201ENSMUST00000104196 155 ntBASIC2.57□□□□□ -2
Sdc1P18828 Gm14811-201ENSMUST00000117070 117 ntBASIC2.57□□□□□ -2
Sdc1P18828 Vmn1r-ps1-201ENSMUST00000118738 573 ntBASIC2.57□□□□□ -2
Sdc1P18828 Gm12317-201ENSMUST00000122307 319 ntBASIC2.57□□□□□ -2
Sdc1P18828 Gm11656-201ENSMUST00000137462 395 ntTSL 5 BASIC2.57□□□□□ -2
Sdc1P18828 Gm16111-201ENSMUST00000162128 285 ntBASIC2.57□□□□□ -2
Sdc1P18828 Obox4-ps6-201ENSMUST00000176578 724 ntBASIC2.57□□□□□ -2
Sdc1P18828 Gm24754-201ENSMUST00000177997 107 ntBASIC2.57□□□□□ -2
Sdc1P18828 Gm37616-201ENSMUST00000193974 322 ntBASIC2.57□□□□□ -2
Sdc1P18828 Ighv1-41-201ENSMUST00000194414 329 ntBASIC2.57□□□□□ -2
Sdc1P18828 4930558F17Rik-201ENSMUST00000197789 786 ntTSL 1 (best) BASIC2.57□□□□□ -2
Sdc1P18828 Gm43640-201ENSMUST00000199000 786 ntTSL 5 BASIC2.57□□□□□ -2
Retrieved 100 of 76,532 protein–RNA pairs in 109.7 ms