Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Scn11aQ9R053 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Scn11aQ9R053 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Scn11aQ9R053 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Scn11aQ9R053 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC20.48■□□□□ 0.87
Scn11aQ9R053 Gm6190-201ENSMUST00000220683 1374 ntBASIC20.48■□□□□ 0.87
Scn11aQ9R053 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Scn11aQ9R053 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Scn11aQ9R053 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Scn11aQ9R053 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC20.48■□□□□ 0.87
Scn11aQ9R053 Gm5712-201ENSMUST00000199748 1043 ntBASIC20.48■□□□□ 0.87
Scn11aQ9R053 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Scn11aQ9R053 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Scn11aQ9R053 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Scn11aQ9R053 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Scn11aQ9R053 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Scn11aQ9R053 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Scn11aQ9R053 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Scn11aQ9R053 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Scn11aQ9R053 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Scn11aQ9R053 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC20.46■□□□□ 0.87
Scn11aQ9R053 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Scn11aQ9R053 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC20.46■□□□□ 0.87
Scn11aQ9R053 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
Scn11aQ9R053 Spr-ps1-201ENSMUST00000089584 605 ntBASIC20.46■□□□□ 0.87
Scn11aQ9R053 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Scn11aQ9R053 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Scn11aQ9R053 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Scn11aQ9R053 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Scn11aQ9R053 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Scn11aQ9R053 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC20.46■□□□□ 0.87
Scn11aQ9R053 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC20.46■□□□□ 0.87
Scn11aQ9R053 Gm44450-201ENSMUST00000199528 114 ntBASIC20.46■□□□□ 0.87
Scn11aQ9R053 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Scn11aQ9R053 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Scn11aQ9R053 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Scn11aQ9R053 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Scn11aQ9R053 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Scn11aQ9R053 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Scn11aQ9R053 Gm8969-201ENSMUST00000199694 526 ntBASIC20.45■□□□□ 0.86
Scn11aQ9R053 Otx2os1-206ENSMUST00000228153 787 ntBASIC20.45■□□□□ 0.86
Scn11aQ9R053 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC20.45■□□□□ 0.86
Scn11aQ9R053 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Scn11aQ9R053 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC20.45■□□□□ 0.86
Scn11aQ9R053 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Scn11aQ9R053 Wnt10b-204ENSMUST00000226655 1807 ntBASIC20.44■□□□□ 0.86
Scn11aQ9R053 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Scn11aQ9R053 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Scn11aQ9R053 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC20.44■□□□□ 0.86
Scn11aQ9R053 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
Scn11aQ9R053 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Scn11aQ9R053 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Scn11aQ9R053 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Scn11aQ9R053 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Scn11aQ9R053 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Scn11aQ9R053 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Scn11aQ9R053 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Scn11aQ9R053 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Scn11aQ9R053 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Scn11aQ9R053 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Scn11aQ9R053 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC20.44■□□□□ 0.86
Scn11aQ9R053 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC20.44■□□□□ 0.86
Scn11aQ9R053 Gm42939-201ENSMUST00000197514 2205 ntBASIC20.44■□□□□ 0.86
Scn11aQ9R053 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Scn11aQ9R053 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Scn11aQ9R053 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Scn11aQ9R053 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Scn11aQ9R053 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scn11aQ9R053 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC20.43■□□□□ 0.86
Scn11aQ9R053 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scn11aQ9R053 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scn11aQ9R053 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scn11aQ9R053 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scn11aQ9R053 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scn11aQ9R053 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC20.43■□□□□ 0.86
Scn11aQ9R053 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC20.43■□□□□ 0.86
Scn11aQ9R053 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Scn11aQ9R053 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Scn11aQ9R053 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Scn11aQ9R053 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC20.43■□□□□ 0.86
Scn11aQ9R053 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC20.43■□□□□ 0.86
Scn11aQ9R053 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scn11aQ9R053 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scn11aQ9R053 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scn11aQ9R053 Zkscan4-202ENSMUST00000225845 1506 ntBASIC20.42■□□□□ 0.86
Scn11aQ9R053 AL590614.2-201ENSMUST00000225374 1937 ntBASIC20.42■□□□□ 0.86
Scn11aQ9R053 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Scn11aQ9R053 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Scn11aQ9R053 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Scn11aQ9R053 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Scn11aQ9R053 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Scn11aQ9R053 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Scn11aQ9R053 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Scn11aQ9R053 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Scn11aQ9R053 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Scn11aQ9R053 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Scn11aQ9R053 Gm11336-201ENSMUST00000118168 334 ntBASIC20.42■□□□□ 0.86
Scn11aQ9R053 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Scn11aQ9R053 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Scn11aQ9R053 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 11.8 ms