Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Gm14859-201ENSMUST00000117752 357 ntBASIC18.68■□□□□ 0.58
Trim54Q9ERP3 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC18.68■□□□□ 0.58
Trim54Q9ERP3 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Trim54Q9ERP3 Mir1668-201ENSMUST00000184114 107 ntBASIC18.68■□□□□ 0.58
Trim54Q9ERP3 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
Trim54Q9ERP3 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim54Q9ERP3 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim54Q9ERP3 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim54Q9ERP3 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim54Q9ERP3 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim54Q9ERP3 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trim54Q9ERP3 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trim54Q9ERP3 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim54Q9ERP3 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim54Q9ERP3 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim54Q9ERP3 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trim54Q9ERP3 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
Trim54Q9ERP3 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Trim54Q9ERP3 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC18.67■□□□□ 0.58
Trim54Q9ERP3 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Trim54Q9ERP3 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim54Q9ERP3 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim54Q9ERP3 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim54Q9ERP3 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Trim54Q9ERP3 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim54Q9ERP3 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC18.67■□□□□ 0.58
Trim54Q9ERP3 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim54Q9ERP3 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim54Q9ERP3 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim54Q9ERP3 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Trim54Q9ERP3 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim54Q9ERP3 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim54Q9ERP3 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC18.66■□□□□ 0.58
Trim54Q9ERP3 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim54Q9ERP3 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim54Q9ERP3 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC18.66■□□□□ 0.58
Trim54Q9ERP3 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trim54Q9ERP3 AC154471.1-201ENSMUST00000224418 436 ntBASIC18.66■□□□□ 0.58
Trim54Q9ERP3 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim54Q9ERP3 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Trim54Q9ERP3 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim54Q9ERP3 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim54Q9ERP3 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trim54Q9ERP3 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trim54Q9ERP3 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim54Q9ERP3 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim54Q9ERP3 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Trim54Q9ERP3 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim54Q9ERP3 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim54Q9ERP3 Gm7284-201ENSMUST00000131667 944 ntBASIC18.65■□□□□ 0.58
Trim54Q9ERP3 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trim54Q9ERP3 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC18.65■□□□□ 0.58
Trim54Q9ERP3 Gm17661-201ENSMUST00000170317 270 ntBASIC18.65■□□□□ 0.58
Trim54Q9ERP3 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC18.65■□□□□ 0.58
Trim54Q9ERP3 Ank2-226ENSMUST00000189368 339 ntBASIC18.65■□□□□ 0.58
Trim54Q9ERP3 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC18.65■□□□□ 0.58
Trim54Q9ERP3 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim54Q9ERP3 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim54Q9ERP3 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim54Q9ERP3 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trim54Q9ERP3 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC18.65■□□□□ 0.58
Trim54Q9ERP3 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Trim54Q9ERP3 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.58
Trim54Q9ERP3 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
Trim54Q9ERP3 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trim54Q9ERP3 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim54Q9ERP3 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC18.64■□□□□ 0.57
Trim54Q9ERP3 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC18.64■□□□□ 0.57
Trim54Q9ERP3 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Trim54Q9ERP3 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Trim54Q9ERP3 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim54Q9ERP3 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim54Q9ERP3 Grk6-206ENSMUST00000224995 2971 ntBASIC18.64■□□□□ 0.57
Trim54Q9ERP3 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim54Q9ERP3 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim54Q9ERP3 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim54Q9ERP3 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim54Q9ERP3 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim54Q9ERP3 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Trim54Q9ERP3 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim54Q9ERP3 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim54Q9ERP3 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim54Q9ERP3 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim54Q9ERP3 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim54Q9ERP3 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim54Q9ERP3 Gm45141-201ENSMUST00000206502 1888 ntBASIC18.63■□□□□ 0.57
Trim54Q9ERP3 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
Trim54Q9ERP3 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim54Q9ERP3 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC18.63■□□□□ 0.57
Trim54Q9ERP3 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC18.63■□□□□ 0.57
Trim54Q9ERP3 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC18.63■□□□□ 0.57
Trim54Q9ERP3 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim54Q9ERP3 Gm5587-201ENSMUST00000206270 674 ntBASIC18.63■□□□□ 0.57
Trim54Q9ERP3 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trim54Q9ERP3 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim54Q9ERP3 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim54Q9ERP3 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trim54Q9ERP3 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim54Q9ERP3 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim54Q9ERP3 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 20.3 ms