Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps28Q9D1C8 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps28Q9D1C8 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
Vps28Q9D1C8 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps28Q9D1C8 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Vps28Q9D1C8 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC17.7■□□□□ 0.42
Vps28Q9D1C8 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps28Q9D1C8 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps28Q9D1C8 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps28Q9D1C8 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Vps28Q9D1C8 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
Vps28Q9D1C8 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Vps28Q9D1C8 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Vps28Q9D1C8 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Vps28Q9D1C8 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC17.69■□□□□ 0.42
Vps28Q9D1C8 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC17.69■□□□□ 0.42
Vps28Q9D1C8 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
Vps28Q9D1C8 Gm24841-201ENSMUST00000158676 357 ntBASIC17.69■□□□□ 0.42
Vps28Q9D1C8 Gm43799-201ENSMUST00000201845 579 ntBASIC17.69■□□□□ 0.42
Vps28Q9D1C8 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC17.69■□□□□ 0.42
Vps28Q9D1C8 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Vps28Q9D1C8 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Vps28Q9D1C8 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Vps28Q9D1C8 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Vps28Q9D1C8 Gm43548-201ENSMUST00000197139 2353 ntBASIC17.68■□□□□ 0.42
Vps28Q9D1C8 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Vps28Q9D1C8 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Vps28Q9D1C8 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Vps28Q9D1C8 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Vps28Q9D1C8 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Vps28Q9D1C8 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Vps28Q9D1C8 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Vps28Q9D1C8 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC17.68■□□□□ 0.42
Vps28Q9D1C8 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Vps28Q9D1C8 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Vps28Q9D1C8 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Vps28Q9D1C8 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Vps28Q9D1C8 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Vps28Q9D1C8 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Vps28Q9D1C8 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Vps28Q9D1C8 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Vps28Q9D1C8 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Vps28Q9D1C8 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Vps28Q9D1C8 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC17.67■□□□□ 0.42
Vps28Q9D1C8 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Vps28Q9D1C8 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Vps28Q9D1C8 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Vps28Q9D1C8 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Vps28Q9D1C8 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Vps28Q9D1C8 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Vps28Q9D1C8 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Vps28Q9D1C8 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Vps28Q9D1C8 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Vps28Q9D1C8 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Vps28Q9D1C8 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Vps28Q9D1C8 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Vps28Q9D1C8 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Vps28Q9D1C8 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Vps28Q9D1C8 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC17.66■□□□□ 0.42
Vps28Q9D1C8 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Vps28Q9D1C8 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Vps28Q9D1C8 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC17.66■□□□□ 0.42
Vps28Q9D1C8 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Vps28Q9D1C8 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Vps28Q9D1C8 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
Vps28Q9D1C8 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC17.66■□□□□ 0.42
Vps28Q9D1C8 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Vps28Q9D1C8 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Vps28Q9D1C8 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Vps28Q9D1C8 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Vps28Q9D1C8 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Vps28Q9D1C8 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Vps28Q9D1C8 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC17.65■□□□□ 0.42
Vps28Q9D1C8 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps28Q9D1C8 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps28Q9D1C8 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps28Q9D1C8 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Vps28Q9D1C8 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC17.65■□□□□ 0.42
Vps28Q9D1C8 Gm11539-201ENSMUST00000119837 557 ntBASIC17.65■□□□□ 0.42
Vps28Q9D1C8 Gm13436-201ENSMUST00000120418 567 ntBASIC17.65■□□□□ 0.42
Vps28Q9D1C8 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC17.65■□□□□ 0.42
Vps28Q9D1C8 Gm27463-201ENSMUST00000183569 57 ntBASIC17.65■□□□□ 0.42
Vps28Q9D1C8 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
Vps28Q9D1C8 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps28Q9D1C8 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Vps28Q9D1C8 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Vps28Q9D1C8 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps28Q9D1C8 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps28Q9D1C8 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps28Q9D1C8 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Vps28Q9D1C8 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps28Q9D1C8 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
Vps28Q9D1C8 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps28Q9D1C8 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC17.65■□□□□ 0.42
Vps28Q9D1C8 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps28Q9D1C8 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Vps28Q9D1C8 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps28Q9D1C8 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Vps28Q9D1C8 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
Vps28Q9D1C8 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC17.64■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 37.4 ms