Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Smc1aQ9CU62 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Smc1aQ9CU62 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Smc1aQ9CU62 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Smc1aQ9CU62 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Smc1aQ9CU62 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Smc1aQ9CU62 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Smc1aQ9CU62 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Smc1aQ9CU62 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Smc1aQ9CU62 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
Smc1aQ9CU62 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
Smc1aQ9CU62 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Smc1aQ9CU62 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Smc1aQ9CU62 Gm5417-201ENSMUST00000079706 384 ntBASIC19.28■□□□□ 0.68
Smc1aQ9CU62 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
Smc1aQ9CU62 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Smc1aQ9CU62 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Smc1aQ9CU62 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Smc1aQ9CU62 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Smc1aQ9CU62 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Smc1aQ9CU62 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Smc1aQ9CU62 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Smc1aQ9CU62 Gm45906-201ENSMUST00000208911 1430 ntBASIC19.27■□□□□ 0.68
Smc1aQ9CU62 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Smc1aQ9CU62 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC19.27■□□□□ 0.68
Smc1aQ9CU62 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Smc1aQ9CU62 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Smc1aQ9CU62 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Smc1aQ9CU62 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Smc1aQ9CU62 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Smc1aQ9CU62 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Smc1aQ9CU62 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Smc1aQ9CU62 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
Smc1aQ9CU62 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smc1aQ9CU62 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smc1aQ9CU62 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smc1aQ9CU62 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Smc1aQ9CU62 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smc1aQ9CU62 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC19.26■□□□□ 0.67
Smc1aQ9CU62 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smc1aQ9CU62 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smc1aQ9CU62 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC19.26■□□□□ 0.67
Smc1aQ9CU62 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC19.26■□□□□ 0.67
Smc1aQ9CU62 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Smc1aQ9CU62 AC175538.1-201ENSMUST00000225343 1269 ntBASIC19.26■□□□□ 0.67
Smc1aQ9CU62 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smc1aQ9CU62 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smc1aQ9CU62 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smc1aQ9CU62 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smc1aQ9CU62 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC19.26■□□□□ 0.67
Smc1aQ9CU62 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smc1aQ9CU62 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smc1aQ9CU62 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smc1aQ9CU62 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smc1aQ9CU62 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smc1aQ9CU62 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Smc1aQ9CU62 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC19.25■□□□□ 0.67
Smc1aQ9CU62 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smc1aQ9CU62 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smc1aQ9CU62 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smc1aQ9CU62 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smc1aQ9CU62 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Smc1aQ9CU62 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Smc1aQ9CU62 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smc1aQ9CU62 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smc1aQ9CU62 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smc1aQ9CU62 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smc1aQ9CU62 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smc1aQ9CU62 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smc1aQ9CU62 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smc1aQ9CU62 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smc1aQ9CU62 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smc1aQ9CU62 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smc1aQ9CU62 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smc1aQ9CU62 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smc1aQ9CU62 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smc1aQ9CU62 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smc1aQ9CU62 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smc1aQ9CU62 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC19.24■□□□□ 0.67
Smc1aQ9CU62 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Smc1aQ9CU62 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC19.24■□□□□ 0.67
Smc1aQ9CU62 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC19.24■□□□□ 0.67
Smc1aQ9CU62 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smc1aQ9CU62 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smc1aQ9CU62 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smc1aQ9CU62 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smc1aQ9CU62 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smc1aQ9CU62 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smc1aQ9CU62 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC19.23■□□□□ 0.67
Smc1aQ9CU62 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Smc1aQ9CU62 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Smc1aQ9CU62 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Smc1aQ9CU62 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Smc1aQ9CU62 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Smc1aQ9CU62 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Smc1aQ9CU62 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Smc1aQ9CU62 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Smc1aQ9CU62 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Smc1aQ9CU62 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
Smc1aQ9CU62 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 31.4 ms